Chlorine in PDB 5vxt: Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Ambifaria

Protein crystallography data

The structure of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Ambifaria, PDB code: 5vxt was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.81 / 1.75
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 66.080, 52.200, 105.190, 90.00, 106.62, 90.00
R / Rfree (%) 18.6 / 22.4

Other elements in 5vxt:

The structure of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Ambifaria also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Ambifaria (pdb code 5vxt). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Ambifaria, PDB code: 5vxt:

Chlorine binding site 1 out of 1 in 5vxt

Go back to Chlorine Binding Sites List in 5vxt
Chlorine binding site 1 out of 1 in the Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Ambifaria


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Ambifaria within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl406

b:33.6
occ:1.00
O A:HOH503 2.6 40.7 1.0
O A:HOH582 3.1 41.9 1.0
N A:HIS172 3.1 28.9 1.0
N A:GLN179 3.1 35.4 1.0
CA A:HIS172 3.5 31.8 0.4
CA A:HIS172 3.6 31.7 0.6
CA A:LYS178 3.7 38.1 1.0
CB A:ASP174 3.8 30.1 1.0
O A:GLY177 3.9 46.2 1.0
N A:ASP174 3.9 28.5 1.0
C A:LYS178 3.9 39.7 1.0
C A:HIS172 3.9 30.8 1.0
CB A:GLN179 3.9 28.5 1.0
N A:PHE173 4.0 29.9 1.0
CA A:GLN179 4.0 30.3 1.0
CG A:GLN179 4.0 29.1 1.0
C A:SER171 4.1 31.0 1.0
CA A:SER171 4.1 26.5 1.0
O A:GLN179 4.3 32.2 1.0
CG A:LYS178 4.3 52.8 1.0
CA A:ASP174 4.4 29.1 1.0
O A:TYR170 4.5 23.5 1.0
C A:GLN179 4.6 37.2 1.0
CB A:LYS178 4.6 44.7 1.0
N A:LYS178 4.6 39.9 1.0
C A:GLY177 4.6 46.5 1.0
O A:ASP174 4.6 31.1 1.0
O A:HIS172 4.7 34.6 1.0
CD A:LYS178 4.7 56.4 1.0
CB A:SER171 4.9 28.8 1.0
C A:PHE173 4.9 29.7 1.0
CD A:GLN179 4.9 29.7 1.0
O A:HOH559 4.9 50.9 1.0
CA A:PHE173 5.0 25.3 1.0
CB A:HIS172 5.0 31.1 0.4

Reference:

J.N.Phan, D.M.Dranow, D.Lorimer, T.E.Edwards. Crystal Structure of Catechol 1,2-Dioxygenase From Burkholderia Ambifaria To Be Published.
Page generated: Sat Dec 12 12:35:21 2020

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