Chlorine in PDB 5wq3: Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum

Protein crystallography data

The structure of Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum, PDB code: 5wq3 was solved by H.Seo, K.-J.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.95
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 98.701, 173.623, 79.903, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 22.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum (pdb code 5wq3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum, PDB code: 5wq3:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 5wq3

Go back to Chlorine Binding Sites List in 5wq3
Chlorine binding site 1 out of 5 in the Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl304

b:39.0
occ:1.00
O B:HOH445 3.0 37.7 1.0
N B:GLY172 3.0 27.1 1.0
OG1 B:THR175 3.3 20.9 1.0
N B:THR175 3.3 23.0 1.0
CA B:GLY172 3.6 28.1 1.0
C B:GLY172 3.6 30.3 1.0
N B:GLY174 3.7 21.8 1.0
O B:HOH414 3.7 35.3 1.0
O B:GLY172 3.9 29.8 1.0
CA B:GLY174 3.9 24.9 1.0
CB B:THR175 4.0 21.7 1.0
N B:PHE173 4.0 27.5 1.0
C B:GLY171 4.0 23.0 1.0
C B:GLY174 4.1 26.2 1.0
CA B:SER76 4.1 27.3 1.0
CA B:GLY171 4.2 23.8 1.0
CA B:THR175 4.2 21.4 1.0
N B:SER76 4.4 25.8 1.0
O B:GLY75 4.4 22.6 1.0
O B:HOH426 4.4 30.5 1.0
C B:GLY75 4.5 26.4 1.0
O B:HOH477 4.6 48.7 1.0
C B:PHE173 4.6 25.5 1.0
CB B:SER76 4.8 27.9 1.0
N B:ALA77 4.9 30.7 1.0
CA B:PHE173 4.9 26.9 1.0

Chlorine binding site 2 out of 5 in 5wq3

Go back to Chlorine Binding Sites List in 5wq3
Chlorine binding site 2 out of 5 in the Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl305

b:57.5
occ:1.00
OD1 B:ASP233 3.0 29.5 1.0
CG B:ASP233 3.6 28.6 1.0
CB B:ASP233 3.8 25.8 1.0
CA B:GLY200 4.2 21.2 1.0
CA B:ASP233 4.2 24.0 1.0
N B:GLY200 4.4 22.6 1.0
CG2 B:ILE199 4.4 21.1 1.0
OD2 B:ASP233 4.6 27.3 1.0
O B:ASP233 4.7 24.1 1.0
O B:HOH441 4.8 22.5 1.0
CB B:ALA88 5.0 25.5 1.0
C B:ASP233 5.0 22.8 1.0

Chlorine binding site 3 out of 5 in 5wq3

Go back to Chlorine Binding Sites List in 5wq3
Chlorine binding site 3 out of 5 in the Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl303

b:33.2
occ:1.00
OG1 C:THR175 3.1 21.6 1.0
N C:GLY172 3.1 28.6 1.0
N C:THR175 3.3 21.1 1.0
C C:GLY172 3.6 24.8 1.0
CA C:GLY172 3.7 24.9 1.0
N C:GLY174 3.7 22.5 1.0
CB C:THR175 3.8 22.5 1.0
O C:HOH409 3.8 30.2 1.0
O C:GLY172 3.9 22.0 1.0
CA C:SER76 3.9 25.2 1.0
CA C:GLY174 4.0 23.2 1.0
C C:GLY171 4.1 25.2 1.0
N C:PHE173 4.1 22.6 1.0
C C:GLY174 4.1 22.9 1.0
CA C:THR175 4.1 22.1 1.0
CA C:GLY171 4.2 25.1 1.0
N C:SER76 4.3 22.9 1.0
O C:HOH452 4.4 31.8 1.0
C C:GLY75 4.4 20.8 1.0
O C:GLY75 4.4 21.6 1.0
C C:PHE173 4.7 21.4 1.0
CB C:SER76 4.7 28.0 1.0
N C:ALA77 4.7 27.4 1.0
C C:SER76 4.9 24.9 1.0
O C:HOH500 5.0 47.3 1.0
O C:HOH504 5.0 51.5 1.0

Chlorine binding site 4 out of 5 in 5wq3

Go back to Chlorine Binding Sites List in 5wq3
Chlorine binding site 4 out of 5 in the Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl304

b:46.2
occ:0.50
OE1 C:GLN237 2.8 21.9 1.0
O C:HOH449 2.9 19.9 1.0
OG1 C:THR232 3.4 21.4 1.0
CD C:GLN237 3.7 19.8 1.0
C6 C:PGE302 3.8 50.4 1.0
CB C:ASP234 3.9 24.8 1.0
NE2 C:GLN237 4.1 20.4 1.0
O3 C:PGE302 4.1 39.4 1.0
CB C:THR232 4.6 22.3 1.0
C5 C:PGE302 4.6 55.2 1.0
OD2 C:ASP234 4.7 33.1 1.0
CG C:ASP234 4.8 29.2 1.0
N C:ASP234 4.8 26.2 1.0
O4 C:PGE302 4.9 57.5 1.0
CG C:GLN237 4.9 21.1 1.0
CB C:GLN237 5.0 21.3 1.0

Chlorine binding site 5 out of 5 in 5wq3

Go back to Chlorine Binding Sites List in 5wq3
Chlorine binding site 5 out of 5 in the Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl305

b:63.4
occ:1.00
O C:HOH462 2.6 44.1 1.0
O C:HOH501 2.7 49.1 1.0
OD1 C:ASP233 3.2 29.1 1.0
CG C:ASP233 3.8 32.0 1.0
CB C:ASP233 4.1 29.4 1.0
CA C:GLY200 4.3 22.6 1.0
O C:HOH468 4.4 25.6 1.0
CA C:ASP233 4.5 25.9 1.0
CG2 C:ILE199 4.5 23.1 1.0
N C:GLY200 4.6 25.0 1.0
O C:ASP233 4.7 26.4 1.0
OD2 C:ASP233 4.7 27.6 1.0
O C:HOH450 4.9 23.2 1.0
CD1 C:TYR85 5.0 29.1 1.0

Reference:

H.Seo, K.-J.Kim. Structural Basis For A Novel Type of Cytokinin-Activating Protein Sci Rep V. 7 45985 2017.
ISSN: ESSN 2045-2322
PubMed: 28374778
DOI: 10.1038/SREP45985
Page generated: Sat Dec 12 12:37:25 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy