Chlorine in PDB 5wq3: Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum

The structure of Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum, PDB code: 5wq3 was solved by H.Seo, K.-J.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.95
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	98.701, 173.623, 79.903, 90.00, 90.00, 90.00
R / Rfree (%)	17.8 / 22.7

The binding sites of Chlorine atom in the Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum (pdb code 5wq3). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum, PDB code: 5wq3:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl304 b:39.0 occ:1.00 O B:HOH445 3.0 37.7 1.0 N B:GLY172 3.0 27.1 1.0 OG1 B:THR175 3.3 20.9 1.0 N B:THR175 3.3 23.0 1.0 CA B:GLY172 3.6 28.1 1.0 C B:GLY172 3.6 30.3 1.0 N B:GLY174 3.7 21.8 1.0 O B:HOH414 3.7 35.3 1.0 O B:GLY172 3.9 29.8 1.0 CA B:GLY174 3.9 24.9 1.0 CB B:THR175 4.0 21.7 1.0 N B:PHE173 4.0 27.5 1.0 C B:GLY171 4.0 23.0 1.0 C B:GLY174 4.1 26.2 1.0 CA B:SER76 4.1 27.3 1.0 CA B:GLY171 4.2 23.8 1.0 CA B:THR175 4.2 21.4 1.0 N B:SER76 4.4 25.8 1.0 O B:GLY75 4.4 22.6 1.0 O B:HOH426 4.4 30.5 1.0 C B:GLY75 4.5 26.4 1.0 O B:HOH477 4.6 48.7 1.0 C B:PHE173 4.6 25.5 1.0 CB B:SER76 4.8 27.9 1.0 N B:ALA77 4.9 30.7 1.0 CA B:PHE173 4.9 26.9 1.0

Chlorine binding site 2 out of 5 in the Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl305 b:57.5 occ:1.00 OD1 B:ASP233 3.0 29.5 1.0 CG B:ASP233 3.6 28.6 1.0 CB B:ASP233 3.8 25.8 1.0 CA B:GLY200 4.2 21.2 1.0 CA B:ASP233 4.2 24.0 1.0 N B:GLY200 4.4 22.6 1.0 CG2 B:ILE199 4.4 21.1 1.0 OD2 B:ASP233 4.6 27.3 1.0 O B:ASP233 4.7 24.1 1.0 O B:HOH441 4.8 22.5 1.0 CB B:ALA88 5.0 25.5 1.0 C B:ASP233 5.0 22.8 1.0

Chlorine binding site 3 out of 5 in the Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl303 b:33.2 occ:1.00 OG1 C:THR175 3.1 21.6 1.0 N C:GLY172 3.1 28.6 1.0 N C:THR175 3.3 21.1 1.0 C C:GLY172 3.6 24.8 1.0 CA C:GLY172 3.7 24.9 1.0 N C:GLY174 3.7 22.5 1.0 CB C:THR175 3.8 22.5 1.0 O C:HOH409 3.8 30.2 1.0 O C:GLY172 3.9 22.0 1.0 CA C:SER76 3.9 25.2 1.0 CA C:GLY174 4.0 23.2 1.0 C C:GLY171 4.1 25.2 1.0 N C:PHE173 4.1 22.6 1.0 C C:GLY174 4.1 22.9 1.0 CA C:THR175 4.1 22.1 1.0 CA C:GLY171 4.2 25.1 1.0 N C:SER76 4.3 22.9 1.0 O C:HOH452 4.4 31.8 1.0 C C:GLY75 4.4 20.8 1.0 O C:GLY75 4.4 21.6 1.0 C C:PHE173 4.7 21.4 1.0 CB C:SER76 4.7 28.0 1.0 N C:ALA77 4.7 27.4 1.0 C C:SER76 4.9 24.9 1.0 O C:HOH500 5.0 47.3 1.0 O C:HOH504 5.0 51.5 1.0

Chlorine binding site 4 out of 5 in the Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl304 b:46.2 occ:0.50 OE1 C:GLN237 2.8 21.9 1.0 O C:HOH449 2.9 19.9 1.0 OG1 C:THR232 3.4 21.4 1.0 CD C:GLN237 3.7 19.8 1.0 C6 C:PGE302 3.8 50.4 1.0 CB C:ASP234 3.9 24.8 1.0 NE2 C:GLN237 4.1 20.4 1.0 O3 C:PGE302 4.1 39.4 1.0 CB C:THR232 4.6 22.3 1.0 C5 C:PGE302 4.6 55.2 1.0 OD2 C:ASP234 4.7 33.1 1.0 CG C:ASP234 4.8 29.2 1.0 N C:ASP234 4.8 26.2 1.0 O4 C:PGE302 4.9 57.5 1.0 CG C:GLN237 4.9 21.1 1.0 CB C:GLN237 5.0 21.3 1.0

Chlorine binding site 5 out of 5 in the Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Strcuture of Type-II Log From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl305 b:63.4 occ:1.00 O C:HOH462 2.6 44.1 1.0 O C:HOH501 2.7 49.1 1.0 OD1 C:ASP233 3.2 29.1 1.0 CG C:ASP233 3.8 32.0 1.0 CB C:ASP233 4.1 29.4 1.0 CA C:GLY200 4.3 22.6 1.0 O C:HOH468 4.4 25.6 1.0 CA C:ASP233 4.5 25.9 1.0 CG2 C:ILE199 4.5 23.1 1.0 N C:GLY200 4.6 25.0 1.0 O C:ASP233 4.7 26.4 1.0 OD2 C:ASP233 4.7 27.6 1.0 O C:HOH450 4.9 23.2 1.0 CD1 C:TYR85 5.0 29.1 1.0

H.Seo, K.-J.Kim. Structural Basis For A Novel Type of Cytokinin-Activating Protein Sci Rep V. 7 45985 2017.
ISSN: ESSN 2045-2322
PubMed: 28374778
DOI: 10.1038/SREP45985