Chlorine in PDB 5x4j: The Crystal Structure of Pyrococcus Furiosus Recj (Zn-Soaking)

Protein crystallography data

The structure of The Crystal Structure of Pyrococcus Furiosus Recj (Zn-Soaking), PDB code: 5x4j was solved by M.J.Li, G.S.Yi, F.Yu, H.Zhou, J.N.Chen, C.Y.Xu, F.P.Wang, X.Xiao, J.H.He, X.P.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.89 / 2.04
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 58.614, 67.347, 60.511, 90.00, 112.54, 90.00
R / Rfree (%) 17.7 / 21.2

Other elements in 5x4j:

The structure of The Crystal Structure of Pyrococcus Furiosus Recj (Zn-Soaking) also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of Pyrococcus Furiosus Recj (Zn-Soaking) (pdb code 5x4j). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the The Crystal Structure of Pyrococcus Furiosus Recj (Zn-Soaking), PDB code: 5x4j:

Chlorine binding site 1 out of 1 in 5x4j

Go back to Chlorine Binding Sites List in 5x4j
Chlorine binding site 1 out of 1 in the The Crystal Structure of Pyrococcus Furiosus Recj (Zn-Soaking)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of Pyrococcus Furiosus Recj (Zn-Soaking) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl505

b:38.4
occ:1.00
OG A:SER408 3.5 20.1 1.0
O A:HOH907 3.7 25.5 1.0
NH2 A:ARG410 3.7 19.0 1.0
CA A:GLY445 3.8 14.7 1.0
N A:GLY445 3.8 14.9 1.0
NZ A:LYS406 3.9 35.1 1.0
O A:ALA444 3.9 12.9 1.0
NH1 A:ARG410 3.9 17.9 1.0
C A:ALA444 3.9 16.2 1.0
O A:HOH895 4.0 37.7 1.0
CB A:SER408 4.3 18.9 1.0
CZ A:ARG410 4.3 19.9 1.0
O A:HOH858 4.4 28.4 1.0
CA A:SER408 4.7 14.6 1.0
CA A:ALA444 4.8 15.5 1.0
O A:HOH878 4.8 29.9 1.0
CE A:LYS406 4.8 33.5 1.0

Reference:

M.J.Li, G.S.Yi, F.Yu, H.Zhou, J.N.Chen, C.Y.Xu, F.P.Wang, X.Xiao, J.H.He, X.P.Liu. The Crystal Structure of Pyrococcus Furiosus Recj Implicates It As An Ancestor of Eukaryotic CDC45 Nucleic Acids Res. V. 45 12551 2017.
ISSN: ISSN 0305-1048
DOI: 10.1093/NAR/GKX887
Page generated: Sat Dec 12 12:38:28 2020

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