Chlorine in PDB 5xn7: Crystal Structure of the Effector Domain Rid of Vibrio Vulnificus Martx Toxin

The structure of Crystal Structure of the Effector Domain Rid of Vibrio Vulnificus Martx Toxin, PDB code: 5xn7 was solved by L.Yin, Y.Zhu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	124.743, 185.185, 81.365, 90.00, 95.60, 90.00
R / Rfree (%)	20.3 / 24.4

The binding sites of Chlorine atom in the Crystal Structure of the Effector Domain Rid of Vibrio Vulnificus Martx Toxin (pdb code 5xn7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of the Effector Domain Rid of Vibrio Vulnificus Martx Toxin, PDB code: 5xn7:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Crystal Structure of the Effector Domain Rid of Vibrio Vulnificus Martx Toxin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Effector Domain Rid of Vibrio Vulnificus Martx Toxin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl2906 b:92.3 occ:1.00 O A:HOH3013 2.6 52.2 1.0 O A:ASP2485 2.6 50.6 1.0 ND2 A:ASN2488 2.9 48.3 1.0 OD1 A:ASP2485 3.5 58.3 1.0 O A:HOH3045 3.8 48.6 1.0 C A:ASP2485 3.8 45.1 1.0 CG A:ASN2488 4.0 47.7 1.0 NE2 A:GLN2398 4.2 61.5 1.0 CG A:ASP2485 4.2 61.3 1.0 OD1 A:ASN2488 4.3 53.6 1.0 OE1 A:GLU2394 4.6 62.3 1.0 CA A:ASP2485 4.6 45.5 1.0 N A:ASN2486 4.7 44.2 1.0 OD2 A:ASP2485 4.7 61.3 1.0 CA A:ASN2486 4.7 44.3 1.0 OE1 A:GLN2398 4.9 67.6 1.0 CD A:GLN2398 5.0 61.7 1.0

Chlorine binding site 2 out of 3 in the Crystal Structure of the Effector Domain Rid of Vibrio Vulnificus Martx Toxin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Effector Domain Rid of Vibrio Vulnificus Martx Toxin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl2907 b:64.0 occ:1.00 O A:HOH3048 3.0 39.7 1.0 O2 A:SO42903 3.3 0.2 1.0 CB A:ALA2835 3.4 53.8 1.0 O A:HOH3001 4.0 49.2 1.0 N A:ALA2835 4.1 55.1 1.0 ND1 A:HIS2595 4.2 69.2 1.0 CD1 A:TRP2623 4.3 53.9 1.0 CA A:ALA2835 4.3 52.5 1.0 CG A:HIS2595 4.3 67.4 1.0 NH1 A:ARG2782 4.3 54.2 1.0 N A:ALA2596 4.4 57.5 1.0 O3 A:SO42903 4.4 0.6 1.0 S A:SO42903 4.4 0.1 1.0 O A:ALA2596 4.4 48.5 1.0 CA A:HIS2595 4.5 63.2 1.0 CE1 A:HIS2595 4.6 71.5 1.0 CB A:HIS2595 4.6 64.8 1.0 CD2 A:HIS2595 4.8 68.7 1.0 O A:GLY2594 4.8 66.9 1.0 NE2 A:HIS2595 4.9 72.6 1.0 NE1 A:TRP2623 5.0 55.1 1.0

Chlorine binding site 3 out of 3 in the Crystal Structure of the Effector Domain Rid of Vibrio Vulnificus Martx Toxin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Effector Domain Rid of Vibrio Vulnificus Martx Toxin within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl2902 b:46.0 occ:1.00 O B:HOH3019 3.0 29.6 1.0 CD2 B:HIS2595 3.4 72.2 1.0 CB B:ALA2835 3.5 46.4 1.0 CG B:HIS2595 3.9 70.5 1.0 N B:ALA2835 4.0 48.4 1.0 CA B:HIS2595 4.1 64.9 1.0 N B:ALA2596 4.1 57.1 1.0 NE2 B:HIS2595 4.1 74.7 1.0 CD1 B:TRP2623 4.2 49.5 1.0 CB B:HIS2595 4.3 66.7 1.0 CA B:ALA2835 4.4 45.8 1.0 O B:ALA2596 4.4 52.4 1.0 O B:GLY2594 4.5 69.7 1.0 C B:HIS2595 4.6 61.4 1.0 NH1 B:ARG2782 4.7 50.3 1.0 ND1 B:HIS2595 4.8 73.7 1.0 NE1 B:TRP2623 4.8 51.1 1.0 CE1 B:HIS2595 4.9 74.2 1.0

L.Yin, Y.Zhu. Crystal Structure of A Martx Toxin Effector Domain To Be Published.