Atomistry » Chlorine » PDB 5xd5-5xnq » 5xn9
Atomistry »
  Chlorine »
    PDB 5xd5-5xnq »
      5xn9 »

Chlorine in PDB 5xn9: Crystal Structure of A Secretary Abundant Heat Soluble (Sahs) Protein From Ramazzottius Varieornatus (From Monomer Sample)

Protein crystallography data

The structure of Crystal Structure of A Secretary Abundant Heat Soluble (Sahs) Protein From Ramazzottius Varieornatus (From Monomer Sample), PDB code: 5xn9 was solved by Y.Fukuda, Y.Miura, E.Mizohata, T.Inoue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.26 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.866, 57.505, 111.723, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 17.2

Other elements in 5xn9:

The structure of Crystal Structure of A Secretary Abundant Heat Soluble (Sahs) Protein From Ramazzottius Varieornatus (From Monomer Sample) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Secretary Abundant Heat Soluble (Sahs) Protein From Ramazzottius Varieornatus (From Monomer Sample) (pdb code 5xn9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Secretary Abundant Heat Soluble (Sahs) Protein From Ramazzottius Varieornatus (From Monomer Sample), PDB code: 5xn9:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5xn9

Go back to Chlorine Binding Sites List in 5xn9
Chlorine binding site 1 out of 2 in the Crystal Structure of A Secretary Abundant Heat Soluble (Sahs) Protein From Ramazzottius Varieornatus (From Monomer Sample)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Secretary Abundant Heat Soluble (Sahs) Protein From Ramazzottius Varieornatus (From Monomer Sample) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:27.1
occ:0.85
ZN B:ZN204 2.3 18.8 0.8
NE2 A:HIS129 3.4 21.9 1.0
ND1 B:HIS129 3.5 18.9 1.0
CD2 A:HIS129 3.6 20.9 1.0
CL B:CL205 3.6 21.4 0.9
CG B:PRO131 3.8 29.8 1.0
CE B:LYS114 3.8 46.7 1.0
NZ B:LYS114 3.8 51.0 1.0
CB B:HIS129 3.9 19.5 1.0
CG B:HIS129 4.0 17.9 1.0
O A:HOH381 4.1 40.0 0.6
CB B:PRO131 4.3 26.9 1.0
O A:HOH364 4.4 60.1 1.0
CE1 B:HIS129 4.5 19.2 1.0
O A:HOH351 4.7 45.3 1.0
CE1 A:HIS129 4.7 23.9 1.0
CD B:PRO131 4.8 25.3 1.0
CA B:PRO131 4.9 23.8 1.0
CG A:HIS129 4.9 21.5 1.0
O2 B:EDO207 5.0 44.6 1.0

Chlorine binding site 2 out of 2 in 5xn9

Go back to Chlorine Binding Sites List in 5xn9
Chlorine binding site 2 out of 2 in the Crystal Structure of A Secretary Abundant Heat Soluble (Sahs) Protein From Ramazzottius Varieornatus (From Monomer Sample)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Secretary Abundant Heat Soluble (Sahs) Protein From Ramazzottius Varieornatus (From Monomer Sample) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl205

b:21.4
occ:0.89
ZN B:ZN204 2.2 18.8 0.8
O B:HOH325 3.1 56.8 1.0
ND1 B:HIS129 3.5 18.9 1.0
NE2 A:HIS129 3.6 21.9 1.0
CL A:CL203 3.6 27.1 0.8
O B:LYS135 3.7 19.7 1.0
CA B:PRO131 3.8 23.8 1.0
CG2 B:VAL136 3.8 20.9 1.0
CB B:HIS129 3.8 19.5 1.0
O A:HOH364 4.0 60.1 1.0
N B:PRO131 4.1 21.3 1.0
CG B:HIS129 4.1 17.9 1.0
CE1 A:HIS129 4.1 23.9 1.0
N B:LYS135 4.1 22.6 1.0
O B:VAL130 4.1 19.6 1.0
C B:VAL130 4.1 19.6 1.0
N B:VAL130 4.1 17.9 1.0
C B:LYS135 4.2 17.8 1.0
C B:ASN134 4.2 26.1 0.3
CA B:ASN134 4.3 29.9 0.7
CA B:HIS129 4.4 16.5 1.0
CA B:ASN134 4.5 27.8 0.3
C B:ASN134 4.5 27.1 0.7
CB B:PRO131 4.5 26.9 1.0
CG B:PRO131 4.6 29.8 1.0
CE1 B:HIS129 4.6 19.2 1.0
O B:ASN134 4.6 26.2 0.3
C B:HIS129 4.6 16.4 1.0
CD2 A:HIS129 4.7 20.9 1.0
CD B:PRO131 4.7 25.3 1.0
OD1 B:ASN134 4.7 35.5 0.7
N B:VAL136 4.8 17.7 1.0
CA B:LYS135 4.8 20.4 1.0
CA B:VAL130 4.9 17.9 1.0
C B:PRO131 4.9 23.3 1.0
N B:ASN134 4.9 28.4 0.3

Reference:

Y.Fukuda, Y.Miura, E.Mizohata, T.Inoue. Structural Insights Into A Secretory Abundant Heat-Soluble Protein From An Anhydrobiotic Tardigrade, Ramazzottius Varieornatus Febs Lett. V. 591 2458 2017.
ISSN: ISSN 1873-3468
PubMed: 28703282
DOI: 10.1002/1873-3468.12752
Page generated: Sat Dec 12 12:39:16 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy