Chlorine in PDB 5xnl: Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum

All present enzymatic activity of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum:
1.10.3.9;

The structure of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum also contains other interesting chemical elements:

Magnesium	(Mg)	314 atoms
Manganese	(Mn)	8 atoms
Iron	(Fe)	4 atoms
Calcium	(Ca)	2 atoms

The binding sites of Chlorine atom in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum (pdb code 5xnl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum, PDB code: 5xnl:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl403 b:16.7 occ:1.00 N A:GLU333 3.4 30.2 1.0 OD1 A:ASN181 3.5 20.9 1.0 O A:HOH1001 3.5 99.6 1.0 CA A:HIS332 3.6 31.9 1.0 CB A:HIS332 3.8 26.9 1.0 O A:HOH1042 3.8 43.2 1.0 ND2 A:ASN181 3.9 28.2 1.0 CE D:LYS318 3.9 70.8 1.0 C A:HIS332 4.0 31.3 1.0 CG2 A:VAL185 4.0 27.6 1.0 CG A:ASN181 4.1 21.3 1.0 NZ D:LYS318 4.2 78.1 1.0 CD1 D:LEU322 4.2 31.6 1.0 CG A:GLU333 4.2 35.9 1.0 CB D:LYS318 4.3 33.2 1.0 CA A:GLU333 4.4 28.5 1.0 CG D:LEU322 4.4 32.7 1.0 CD2 D:LEU322 4.4 33.8 1.0 O D:LYS318 4.6 28.7 1.0 O A:MET331 4.8 39.3 1.0 CG A:HIS332 4.8 26.7 1.0 N A:HIS332 4.9 31.0 1.0 CB A:GLU333 4.9 35.9 1.0 CG D:LYS318 4.9 48.0 1.0 CD D:LYS318 4.9 51.0 1.0

Chlorine binding site 2 out of 4 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl404 b:0.9 occ:1.00 N A:ASN338 3.0 47.6 1.0 N C:GLU354 3.3 41.6 1.0 N A:PHE339 3.4 40.9 1.0 CA C:GLY353 3.5 36.3 1.0 CD2 A:PHE339 3.6 44.6 1.0 CA A:HIS337 3.7 40.1 1.0 C A:HIS337 3.8 40.4 1.0 CA A:ASN338 3.9 46.2 1.0 C C:GLY353 4.0 36.5 1.0 O A:HOH1080 4.0 40.1 1.0 CB A:PHE339 4.1 44.9 1.0 C A:ASN338 4.1 46.7 1.0 CB A:ASN338 4.1 51.0 1.0 O A:PHE339 4.1 43.5 1.0 CG A:PHE339 4.2 45.3 1.0 O A:ALA336 4.2 35.5 1.0 CA A:PHE339 4.2 41.4 1.0 CB A:HIS337 4.3 38.1 1.0 CB C:GLU354 4.4 36.6 1.0 CA C:GLU354 4.4 40.6 1.0 CE2 A:PHE339 4.4 45.1 1.0 O A:HOH1081 4.6 30.2 1.0 C A:PHE339 4.7 43.7 1.0 O C:GLY352 4.7 34.6 1.0 O A:HOH1082 4.7 36.7 1.0 CG A:ASN338 4.8 50.4 1.0 N A:HIS337 4.8 38.9 1.0 N C:GLY353 4.8 35.8 1.0 N C:THR355 4.8 35.9 1.0 CD2 A:HIS337 4.9 37.1 1.0 C A:ALA336 4.9 37.1 1.0 CG A:HIS337 4.9 37.4 1.0 ND2 A:ASN338 5.0 47.8 1.0

Chlorine binding site 3 out of 4 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ a:Cl403 b:16.7 occ:1.00 N a:GLU333 3.4 30.2 1.0 OD1 a:ASN181 3.5 20.9 1.0 O a:HOH1001 3.5 99.6 1.0 CA a:HIS332 3.6 31.9 1.0 CB a:HIS332 3.8 26.9 1.0 O a:HOH1042 3.8 43.2 1.0 ND2 a:ASN181 3.9 28.2 1.0 CE d:LYS318 3.9 70.8 1.0 C a:HIS332 4.0 31.3 1.0 CG2 a:VAL185 4.0 27.6 1.0 CG a:ASN181 4.1 21.3 1.0 NZ d:LYS318 4.2 78.1 1.0 CD1 d:LEU322 4.2 31.6 1.0 CG a:GLU333 4.2 35.9 1.0 CB d:LYS318 4.3 33.2 1.0 CA a:GLU333 4.4 28.5 1.0 CG d:LEU322 4.4 32.7 1.0 CD2 d:LEU322 4.4 33.8 1.0 O d:LYS318 4.6 28.7 1.0 O a:MET331 4.8 39.3 1.0 CG a:HIS332 4.8 26.7 1.0 N a:HIS332 4.9 31.0 1.0 CB a:GLU333 4.9 35.9 1.0 CG d:LYS318 4.9 48.0 1.0 CD d:LYS318 4.9 51.0 1.0

Chlorine binding site 4 out of 4 in the Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of Stacked C2S2M2-Type Psii-Lhcii Supercomplex From Pisum Sativum within 5.0Å range: probe atom residue distance (Å) B Occ a:Cl404 b:0.9 occ:1.00 N a:ASN338 3.0 47.6 1.0 N c:GLU354 3.3 41.6 1.0 N a:PHE339 3.4 40.9 1.0 CA c:GLY353 3.5 36.3 1.0 CD2 a:PHE339 3.6 44.6 1.0 CA a:HIS337 3.7 40.1 1.0 C a:HIS337 3.8 40.4 1.0 CA a:ASN338 3.9 46.2 1.0 C c:GLY353 4.0 36.5 1.0 O a:HOH1080 4.0 40.1 1.0 CB a:PHE339 4.1 44.9 1.0 C a:ASN338 4.1 46.7 1.0 CB a:ASN338 4.1 51.0 1.0 O a:PHE339 4.1 43.5 1.0 CG a:PHE339 4.2 45.3 1.0 O a:ALA336 4.2 35.5 1.0 CA a:PHE339 4.2 41.4 1.0 CB a:HIS337 4.3 38.1 1.0 CB c:GLU354 4.4 36.6 1.0 CA c:GLU354 4.4 40.6 1.0 CE2 a:PHE339 4.4 45.1 1.0 O a:HOH1081 4.6 30.2 1.0 C a:PHE339 4.7 43.7 1.0 O c:GLY352 4.7 34.6 1.0 O a:HOH1082 4.7 36.7 1.0 CG a:ASN338 4.8 50.4 1.0 N a:HIS337 4.8 38.9 1.0 N c:GLY353 4.8 35.8 1.0 N c:THR355 4.8 35.9 1.0 CD2 a:HIS337 4.9 37.1 1.0 C a:ALA336 4.9 37.1 1.0 CG a:HIS337 4.9 37.4 1.0 ND2 a:ASN338 5.0 47.8 1.0

X.Su, J.Ma, X.Wei, P.Cao, D.Zhu, W.Chang, Z.Liu, X.Zhang, M.Li. Structure and Assembly Mechanism of Plant C2S2M2-Type Psii-Lhcii Supercomplex Science V. 357 815 2017.
ISSN: ESSN 1095-9203
PubMed: 28839073
DOI: 10.1126/SCIENCE.AAN0327