Chlorine in PDB 5xtu: Crystal Structure of Gdsl Esterase of Photobacterium Sp. J15

Protein crystallography data

The structure of Crystal Structure of Gdsl Esterase of Photobacterium Sp. J15, PDB code: 5xtu was solved by S.N.H.S.Mazlan, M.A.Jonet, T.C.Leow, M.S.M.Ali, R.N.Z.R.A.Rahman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.23 / 1.38
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.182, 66.461, 105.468, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 17.9

Other elements in 5xtu:

The structure of Crystal Structure of Gdsl Esterase of Photobacterium Sp. J15 also contains other interesting chemical elements:

Arsenic (As) 2 atoms
Calcium (Ca) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Gdsl Esterase of Photobacterium Sp. J15 (pdb code 5xtu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Gdsl Esterase of Photobacterium Sp. J15, PDB code: 5xtu:

Chlorine binding site 1 out of 1 in 5xtu

Go back to Chlorine Binding Sites List in 5xtu
Chlorine binding site 1 out of 1 in the Crystal Structure of Gdsl Esterase of Photobacterium Sp. J15


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Gdsl Esterase of Photobacterium Sp. J15 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:9.4
occ:1.00
OG1 A:THR7 3.1 8.5 1.0
NE A:ARG141 3.2 7.5 1.0
NZ A:LYS145 3.2 12.6 1.0
NH2 A:ARG141 3.4 10.1 1.0
O A:GLY98 3.5 10.7 1.0
CG2 A:THR7 3.6 7.0 1.0
CA A:THR99 3.7 7.8 1.0
NE1 A:TRP101 3.7 10.0 1.0
CE A:LYS145 3.7 12.8 1.0
CZ A:ARG141 3.7 8.3 1.0
O A:HOH827 3.8 35.9 1.0
CD A:LYS145 3.9 13.7 1.0
CB A:THR7 3.9 6.8 1.0
O A:HOH534 4.0 27.6 1.0
CG A:ARG141 4.1 7.6 1.0
CG2 A:THR99 4.1 10.3 1.0
O A:THR99 4.1 6.8 1.0
CB A:THR99 4.1 8.7 1.0
CD A:ARG141 4.2 7.8 1.0
CD1 A:TRP101 4.3 8.3 1.0
C A:GLY98 4.4 9.9 1.0
C A:THR99 4.4 7.3 1.0
N A:THR99 4.5 9.4 1.0
CA A:THR7 4.6 6.2 1.0
CE2 A:TRP101 4.8 9.1 1.0

Reference:

S.N.H.S.Mazlan, M.S.M.Ali, R.N.Z.R.A.Rahman, S.Sabri, M.A.Jonet, T.C.Leow. Crystallization and Structure Elucidation of Gdsl Esterase of Photobacterium Sp. J15. Int. J. Biol. Macromol. V. 119 1188 2018.
ISSN: ISSN 1879-0003
PubMed: 30102982
DOI: 10.1016/J.IJBIOMAC.2018.08.022
Page generated: Sat Dec 12 12:39:35 2020

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