Chlorine in PDB 5xyo: Structure of 6-Aminohexanoate-Oligomer Hydrolase From Arthrobacter Sp. KI72., D122G Mutant

Protein crystallography data

The structure of Structure of 6-Aminohexanoate-Oligomer Hydrolase From Arthrobacter Sp. KI72., D122G Mutant, PDB code: 5xyo was solved by S.Negoro, N.Shibata, K.Nagai, Y.Higuchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 72.23 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 70.485, 144.459, 128.353, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 22.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of 6-Aminohexanoate-Oligomer Hydrolase From Arthrobacter Sp. KI72., D122G Mutant (pdb code 5xyo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of 6-Aminohexanoate-Oligomer Hydrolase From Arthrobacter Sp. KI72., D122G Mutant, PDB code: 5xyo:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5xyo

Go back to Chlorine Binding Sites List in 5xyo
Chlorine binding site 1 out of 2 in the Structure of 6-Aminohexanoate-Oligomer Hydrolase From Arthrobacter Sp. KI72., D122G Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of 6-Aminohexanoate-Oligomer Hydrolase From Arthrobacter Sp. KI72., D122G Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:63.3
occ:1.00
CD1 A:LEU207 3.5 45.7 1.0
CG A:LEU207 3.5 40.8 1.0
CD A:ARG205 3.6 37.9 1.0
CD2 A:LEU207 3.7 35.5 1.0
NH1 A:ARG205 4.0 32.9 1.0
NE A:ARG205 4.5 41.9 1.0
CG A:ARG205 4.6 33.8 1.0
CB A:ARG205 4.7 21.0 1.0
CZ A:ARG205 4.7 28.8 1.0
CB A:LEU207 5.0 31.7 1.0

Chlorine binding site 2 out of 2 in 5xyo

Go back to Chlorine Binding Sites List in 5xyo
Chlorine binding site 2 out of 2 in the Structure of 6-Aminohexanoate-Oligomer Hydrolase From Arthrobacter Sp. KI72., D122G Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of 6-Aminohexanoate-Oligomer Hydrolase From Arthrobacter Sp. KI72., D122G Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:64.4
occ:1.00
CE1 B:HIS76 3.9 26.0 1.0
NH1 B:ARG127 4.0 31.1 1.0
O B:HOH546 4.0 35.0 1.0
CD B:ARG127 4.0 36.6 1.0
NE2 B:HIS76 4.2 26.4 1.0
CB B:PRO78 4.3 28.6 1.0
CB B:ARG127 4.7 35.8 1.0
CG B:PRO78 4.9 31.2 1.0
CA B:PRO78 4.9 28.4 1.0
CD2 B:LEU124 4.9 26.8 1.0
CZ B:ARG127 5.0 37.4 1.0
CG B:ARG127 5.0 32.8 1.0
NE B:ARG127 5.0 33.4 1.0

Reference:

S.Negoro, N.Shibata, Y.H.Lee, I.Takehara, R.Kinugasa, K.Nagai, Y.Tanaka, D.I.Kato, M.Takeo, Y.Goto, Y.Higuchi. Structural Basis of the Correct Subunit Assembly, Aggregation, and Intracellular Degradation of Nylon Hydrolase Sci Rep V. 8 9725 2018.
ISSN: ESSN 2045-2322
PubMed: 29950566
DOI: 10.1038/S41598-018-27860-W
Page generated: Sat Dec 12 12:39:49 2020

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