Chlorine in PDB 5y2i: Phosphoglycerate Mutase 1 (PGAM1) Complexed with Its Inhibitor Pgmi- 004A

Enzymatic activity of Phosphoglycerate Mutase 1 (PGAM1) Complexed with Its Inhibitor Pgmi- 004A

All present enzymatic activity of Phosphoglycerate Mutase 1 (PGAM1) Complexed with Its Inhibitor Pgmi- 004A:
5.4.2.11; 5.4.2.4;

Protein crystallography data

The structure of Phosphoglycerate Mutase 1 (PGAM1) Complexed with Its Inhibitor Pgmi- 004A, PDB code: 5y2i was solved by L.Jiang, L.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.57 / 1.92
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 82.762, 85.036, 102.480, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 21.4

Other elements in 5y2i:

The structure of Phosphoglycerate Mutase 1 (PGAM1) Complexed with Its Inhibitor Pgmi- 004A also contains other interesting chemical elements:

Fluorine (F) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Phosphoglycerate Mutase 1 (PGAM1) Complexed with Its Inhibitor Pgmi- 004A (pdb code 5y2i). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Phosphoglycerate Mutase 1 (PGAM1) Complexed with Its Inhibitor Pgmi- 004A, PDB code: 5y2i:

Chlorine binding site 1 out of 1 in 5y2i

Go back to Chlorine Binding Sites List in 5y2i
Chlorine binding site 1 out of 1 in the Phosphoglycerate Mutase 1 (PGAM1) Complexed with Its Inhibitor Pgmi- 004A


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Phosphoglycerate Mutase 1 (PGAM1) Complexed with Its Inhibitor Pgmi- 004A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl302

b:28.3
occ:1.00
 NH2 B:ARG83 3.1 25.7 1.0
NH1 B:ARG83 3.3 26.0 1.0
NH2 C:ARG83 3.3 23.9 1.0
NH1 C:ARG83 3.4 23.3 1.0
NE1 B:TRP68 3.4 23.3 1.0
NE1 C:TRP68 3.4 25.8 1.0
CZ B:ARG83 3.7 25.8 1.0
CZ C:ARG83 3.8 28.0 1.0
CG2 C:VAL81 4.0 25.0 1.0
CG2 B:VAL81 4.1 25.6 1.0
CB C:VAL81 4.1 26.9 1.0
CB B:VAL81 4.1 24.9 1.0
CD1 C:TRP68 4.2 25.9 1.0
CD1 B:TRP68 4.2 24.4 1.0
CE2 B:TRP68 4.3 24.8 1.0
CE2 C:TRP68 4.3 24.4 1.0
CG1 C:VAL81 4.4 26.5 1.0
CG1 B:VAL81 4.4 25.6 1.0
CZ2 B:TRP68 4.6 27.7 1.0
CZ2 C:TRP68 4.6 26.2 1.0
NE B:ARG83 5.0 24.0 1.0

Reference:

L.Jiang, L.Zhou. Phosphoglycerate Mutase 1 (PGAM1) Complexed with Its Inhibitor Pgmi-004A To Be Published.
Page generated: Sat Dec 12 12:40:06 2020

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