Chlorine in PDB 5y9v: Crystal Sturcture of Diamondback Moth Ryanodine Receptor N-Terminal Domain

Protein crystallography data

The structure of Crystal Sturcture of Diamondback Moth Ryanodine Receptor N-Terminal Domain, PDB code: 5y9v was solved by L.Lin, Z.Yuchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.86 / 2.84
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 170.130, 170.130, 51.763, 90.00, 90.00, 120.00
R / Rfree (%) 21.3 / 24.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Sturcture of Diamondback Moth Ryanodine Receptor N-Terminal Domain (pdb code 5y9v). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Sturcture of Diamondback Moth Ryanodine Receptor N-Terminal Domain, PDB code: 5y9v:

Chlorine binding site 1 out of 1 in 5y9v

Go back to Chlorine Binding Sites List in 5y9v
Chlorine binding site 1 out of 1 in the Crystal Sturcture of Diamondback Moth Ryanodine Receptor N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Sturcture of Diamondback Moth Ryanodine Receptor N-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl301

b:89.0
occ:1.00
NH2 B:ARG44 3.4 0.3 1.0
N B:GLU135 3.4 89.9 1.0
CB B:GLU135 3.8 84.0 1.0
CG B:GLN134 4.1 79.1 1.0
CA B:GLU135 4.2 82.5 1.0
CA B:GLN134 4.3 74.2 1.0
CB B:GLN134 4.3 67.7 1.0
C B:GLN134 4.3 84.5 1.0
CZ B:ARG44 4.5 1.0 1.0
CD B:GLN134 4.7 84.3 1.0
N B:HIS136 4.7 65.5 1.0

Reference:

L.Lin, C.Liu, J.Qin, J.Wang, S.Dong, W.Chen, W.He, Q.Gao, M.You, Z.Yuchi. Crystal Structure of Ryanodine Receptor N-Terminal Domain From Plutella Xylostella Reveals Two Potential Species-Specific Insecticide-Targeting Sites. Insect Biochem. Mol. Biol. V. 92 73 2017.
ISSN: ISSN 1879-0240
PubMed: 29191465
DOI: 10.1016/J.IBMB.2017.11.009
Page generated: Sat Dec 12 12:40:22 2020

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