Chlorine in PDB 5ybz: High Resolution Structure of Complement C1Q-Like Protein 3 C1Q Domain

Protein crystallography data

The structure of High Resolution Structure of Complement C1Q-Like Protein 3 C1Q Domain, PDB code: 5ybz was solved by H.Liu, Z.Li, F.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.07 / 1.71
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 54.027, 79.213, 87.495, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 18.7

Other elements in 5ybz:

The structure of High Resolution Structure of Complement C1Q-Like Protein 3 C1Q Domain also contains other interesting chemical elements:

Calcium (Ca) 1 atom
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the High Resolution Structure of Complement C1Q-Like Protein 3 C1Q Domain (pdb code 5ybz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the High Resolution Structure of Complement C1Q-Like Protein 3 C1Q Domain, PDB code: 5ybz:

Chlorine binding site 1 out of 1 in 5ybz

Go back to Chlorine Binding Sites List in 5ybz
Chlorine binding site 1 out of 1 in the High Resolution Structure of Complement C1Q-Like Protein 3 C1Q Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of High Resolution Structure of Complement C1Q-Like Protein 3 C1Q Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl306

b:64.3
occ:1.00
NH2 C:ARG198 3.5 33.6 1.0
NZ A:LYS243 3.6 14.9 1.0
NH1 C:ARG198 3.6 27.8 1.0
O A:HOH484 3.6 33.8 1.0
O A:HOH440 3.8 29.3 1.0
CZ C:ARG198 4.0 38.0 1.0
O C:HOH501 4.1 53.9 1.0
CE A:LYS243 4.2 13.4 1.0
OD1 A:ASP147 4.6 14.6 1.0
O C:HOH460 4.7 55.9 1.0
O C:HOH434 4.9 31.0 1.0

Reference:

H.Liu, Z.Li, F.Xu. High Resolution Structure of Complement C1Q-Like Protein 3 C1Q Domain To Be Published.
Page generated: Sat Dec 12 12:40:26 2020

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