Chlorine in PDB 5yfc: Crystal Structure of A New Dpp III Family Member

All present enzymatic activity of Crystal Structure of A New Dpp III Family Member:
3.4.14.4;

The structure of Crystal Structure of A New Dpp III Family Member, PDB code: 5yfc was solved by T.Xu, J.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	59.01 / 1.76
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	58.390, 207.730, 59.010, 90.00, 90.00, 90.00
R / Rfree (%)	15.2 / 19.8

The binding sites of Chlorine atom in the Crystal Structure of A New Dpp III Family Member (pdb code 5yfc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of A New Dpp III Family Member, PDB code: 5yfc:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Crystal Structure of A New Dpp III Family Member


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A New Dpp III Family Member within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl808 b:35.5 occ:1.00 N A:SER33 3.3 12.1 1.0 O A:HOH1471 3.6 14.7 1.0 OG A:SER33 3.6 13.4 0.5 CB A:SER33 3.9 13.0 0.5 CA A:SER32 3.9 11.9 1.0 CB A:SER33 4.0 12.8 0.5 CB A:SER32 4.0 11.7 1.0 C A:SER32 4.1 11.6 1.0 CA A:SER33 4.2 12.4 0.5 CA A:SER33 4.2 12.4 0.5

Chlorine binding site 2 out of 3 in the Crystal Structure of A New Dpp III Family Member


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A New Dpp III Family Member within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl809 b:47.1 occ:1.00 O A:HOH1335 2.8 18.7 1.0 O A:GLY319 2.9 5.4 1.0 O A:HOH1026 2.9 25.6 1.0 O A:HOH1177 3.0 10.1 1.0 OG1 A:THR487 3.6 6.9 1.0 CD1 A:LEU201 3.7 8.2 1.0 C A:GLY319 3.8 4.9 1.0 CA A:GLY319 3.9 4.9 1.0 CB A:ASP489 4.1 7.2 1.0 CG1 A:ILE200 4.3 10.8 1.0 CD1 A:ILE200 4.5 13.1 1.0 N A:SER490 4.5 6.7 1.0 O A:HOH1354 4.6 18.1 1.0 CB A:SER490 4.6 7.6 1.0 CB A:LEU201 4.7 7.3 1.0 OD1 A:ASP199 4.7 15.1 1.0 CB A:THR487 4.7 7.5 1.0 CA A:LEU201 4.7 6.7 1.0 OD2 A:ASP489 4.7 8.3 1.0 CG2 A:THR487 4.8 8.4 1.0 N A:LEU201 4.8 6.3 1.0 CG A:LEU201 4.8 8.0 1.0 O A:HOH1059 4.9 11.9 1.0

Chlorine binding site 3 out of 3 in the Crystal Structure of A New Dpp III Family Member


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A New Dpp III Family Member within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl808 b:44.0 occ:1.00 O B:HOH1133 2.9 10.1 1.0 O B:HOH1208 2.9 17.6 1.0 O B:GLY319 2.9 5.5 1.0 O B:HOH1063 2.9 26.2 1.0 OG1 B:THR487 3.6 6.8 1.0 CD1 B:LEU201 3.6 7.8 1.0 C B:GLY319 3.8 5.0 1.0 CA B:GLY319 3.9 4.9 1.0 CB B:ASP489 4.1 7.0 1.0 CG1 B:ILE200 4.4 10.7 1.0 O B:HOH1202 4.5 18.3 1.0 N B:SER490 4.6 6.6 1.0 OD2 B:ASP489 4.6 7.8 1.0 CD1 B:ILE200 4.6 12.8 1.0 CB B:THR487 4.7 7.0 1.0 CB B:LEU201 4.7 7.3 1.0 CB B:SER490 4.7 7.6 1.0 CG2 B:THR487 4.7 7.7 1.0 CA B:LEU201 4.7 6.5 1.0 OD1 B:ASP199 4.8 15.1 1.0 CG B:LEU201 4.8 7.8 1.0 O B:HOH1055 4.8 11.2 1.0 N B:LEU201 4.9 6.0 1.0 CG B:ASP489 4.9 7.4 1.0

T.Xu, C.Xie, D.Yao, C.Z.Zhou, J.Liu. Crystal Structures of Aflatoxin-Oxidase From Armillariella Tabescens Reveal A Dual Activity Enzyme. Biochem. Biophys. Res. V. 494 621 2017COMMUN..
ISSN: ESSN 1090-2104
PubMed: 29050944
DOI: 10.1016/J.BBRC.2017.10.077