Atomistry » Chlorine » PDB 5y7x-5yka » 5yfs
Atomistry »
  Chlorine »
    PDB 5y7x-5yka »
      5yfs »

Chlorine in PDB 5yfs: Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant C135S From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate

Enzymatic activity of Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant C135S From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate

All present enzymatic activity of Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant C135S From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate:
5.3.1.29;

Protein crystallography data

The structure of Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant C135S From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate, PDB code: 5yfs was solved by P.Gogoi, S.P.Kanaujia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 85.58 / 2.30
Space group P 31 1 2
Cell size a, b, c (Å), α, β, γ (°) 98.650, 98.650, 256.731, 90.00, 90.00, 120.00
R / Rfree (%) 14.4 / 19.8

Other elements in 5yfs:

The structure of Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant C135S From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate also contains other interesting chemical elements:

Potassium (K) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant C135S From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate (pdb code 5yfs). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant C135S From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate, PDB code: 5yfs:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5yfs

Go back to Chlorine Binding Sites List in 5yfs
Chlorine binding site 1 out of 3 in the Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant C135S From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant C135S From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:56.4
occ:1.00
 O C:HOH643 3.2 57.0 1.0
N A:VAL251 3.3 22.9 1.0
CA A:LEU250 3.9 28.8 1.0
CG2 A:VAL251 3.9 21.6 1.0
CB A:VAL251 4.0 20.8 1.0
CD2 A:LEU250 4.0 41.2 1.0
C A:LEU250 4.1 26.1 1.0
CA A:VAL251 4.2 21.4 1.0
CB A:LEU250 4.4 30.8 1.0
CG2 A:THR207 4.5 20.4 1.0
CD1 A:ILE213 4.6 24.1 1.0
O A:VAL251 4.6 22.8 1.0
O A:GLN249 4.7 25.4 1.0
CG A:LEU250 4.9 35.9 1.0
C A:VAL251 4.9 20.5 1.0

Chlorine binding site 2 out of 3 in 5yfs

Go back to Chlorine Binding Sites List in 5yfs
Chlorine binding site 2 out of 3 in the Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant C135S From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant C135S From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:51.8
occ:1.00
 O B:HOH678 2.5 46.1 1.0
N B:VAL251 3.5 26.4 1.0
CD2 B:LEU250 3.9 35.6 1.0
CA B:LEU250 4.1 27.9 1.0
CB B:VAL251 4.1 25.9 1.0
CG2 B:VAL251 4.2 28.2 1.0
C B:LEU250 4.3 27.1 1.0
CA B:VAL251 4.3 24.4 1.0
O B:VAL251 4.4 23.0 1.0
CB B:LEU250 4.4 30.6 1.0
CD1 B:ILE213 4.6 29.6 1.0
CG2 B:THR207 4.7 19.9 1.0
CG B:LEU250 4.8 35.0 1.0
C B:VAL251 4.9 23.2 1.0

Chlorine binding site 3 out of 3 in 5yfs

Go back to Chlorine Binding Sites List in 5yfs
Chlorine binding site 3 out of 3 in the Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant C135S From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant C135S From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl403

b:58.0
occ:1.00
 O C:HOH661 2.5 40.0 1.0
O B:HOH616 3.2 56.5 1.0
N C:VAL251 3.5 24.6 1.0
CD2 C:LEU250 4.0 30.6 1.0
CB C:VAL251 4.1 25.9 1.0
CA C:LEU250 4.1 25.5 1.0
CG2 C:VAL251 4.2 26.8 1.0
C C:LEU250 4.3 25.0 1.0
CA C:VAL251 4.3 25.0 1.0
O C:VAL251 4.4 29.3 1.0
CB C:LEU250 4.5 26.7 1.0
CD1 C:ILE213 4.5 27.2 1.0
CG2 C:THR207 4.7 18.6 1.0
CG C:LEU250 4.9 29.1 1.0
C C:VAL251 4.9 25.5 1.0

Reference:

P.Gogoi, S.P.Kanaujia. A Presumed Homologue of the Regulatory Subunits of EIF2B Functions As Ribose-1,5-Bisphosphate Isomerase in Pyrococcus Horikoshii OT3. Sci Rep V. 8 1891 2018.
ISSN: ESSN 2045-2322
PubMed: 29382938
DOI: 10.1038/S41598-018-20418-W
Page generated: Fri Jul 26 21:23:12 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy