Chlorine in PDB 5yft: Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant D204N From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate

Enzymatic activity of Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant D204N From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate

All present enzymatic activity of Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant D204N From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate:
5.3.1.29;

Protein crystallography data

The structure of Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant D204N From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate, PDB code: 5yft was solved by P.Gogoi, S.P.Kanaujia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 85.69 / 2.21
Space group P 31 1 2
Cell size a, b, c (Å), α, β, γ (°) 98.810, 98.810, 257.081, 90.00, 90.00, 120.00
R / Rfree (%) 15.1 / 19.3

Other elements in 5yft:

The structure of Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant D204N From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate also contains other interesting chemical elements:

Potassium (K) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant D204N From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate (pdb code 5yft). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant D204N From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate, PDB code: 5yft:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5yft

Go back to Chlorine Binding Sites List in 5yft
Chlorine binding site 1 out of 3 in the Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant D204N From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant D204N From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:54.3
occ:1.00
O A:HOH659 2.9 45.8 1.0
N A:VAL251 3.4 25.3 1.0
CB A:VAL251 4.0 24.1 1.0
CD2 A:LEU250 4.0 37.5 1.0
CA A:LEU250 4.0 28.4 1.0
CG2 A:VAL251 4.1 26.0 1.0
C A:LEU250 4.2 27.9 1.0
CA A:VAL251 4.3 25.0 1.0
CB A:LEU250 4.3 32.0 1.0
CD1 A:ILE213 4.4 29.4 1.0
O A:VAL251 4.4 25.1 1.0
CG2 A:THR207 4.6 20.5 1.0
CG A:LEU250 4.8 34.6 1.0
C A:VAL251 4.9 23.6 1.0

Chlorine binding site 2 out of 3 in 5yft

Go back to Chlorine Binding Sites List in 5yft
Chlorine binding site 2 out of 3 in the Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant D204N From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant D204N From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl403

b:53.1
occ:1.00
N B:VAL251 3.3 24.4 1.0
CD2 B:LEU250 3.8 40.7 1.0
CA B:LEU250 3.9 28.3 1.0
CG2 B:VAL251 3.9 25.5 1.0
CB B:VAL251 4.0 22.0 1.0
C B:LEU250 4.1 27.2 1.0
CA B:VAL251 4.2 23.4 1.0
CB B:LEU250 4.4 29.9 1.0
O B:VAL251 4.4 22.8 1.0
CD1 B:ILE213 4.4 23.7 1.0
CG2 B:THR207 4.5 19.9 1.0
CG B:LEU250 4.7 35.5 1.0
C B:VAL251 4.8 23.0 1.0
O B:GLN249 4.9 26.9 1.0

Chlorine binding site 3 out of 3 in 5yft

Go back to Chlorine Binding Sites List in 5yft
Chlorine binding site 3 out of 3 in the Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant D204N From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Ribose-1,5-Bisphosphate Isomerase Mutant D204N From Pyrococcus Horikoshii OT3 in Complex with Ribose-1,5- Bisphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl403

b:50.4
occ:1.00
O C:HOH631 2.9 41.1 1.0
N C:VAL251 3.4 26.1 1.0
CD2 C:LEU250 4.0 37.3 1.0
CG2 C:VAL251 4.1 26.5 1.0
CA C:LEU250 4.1 28.9 1.0
CB C:VAL251 4.1 25.7 1.0
C C:LEU250 4.2 27.1 1.0
CA C:VAL251 4.3 25.8 1.0
CG2 C:THR207 4.4 20.6 1.0
O C:VAL251 4.5 26.8 1.0
CD1 C:ILE213 4.5 27.7 1.0
CB C:LEU250 4.5 33.8 1.0
CG C:LEU250 4.9 35.2 1.0
C C:VAL251 4.9 26.1 1.0

Reference:

P.Gogoi, S.P.Kanaujia. A Presumed Homologue of the Regulatory Subunits of EIF2B Functions As Ribose-1,5-Bisphosphate Isomerase in Pyrococcus Horikoshii OT3. Sci Rep V. 8 1891 2018.
ISSN: ESSN 2045-2322
PubMed: 29382938
DOI: 10.1038/S41598-018-20418-W
Page generated: Sat Dec 12 12:40:38 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy