Chlorine in PDB 5yfy: Plasmodium Vivax Shmt Bound with Plp-Glycine and GS625

All present enzymatic activity of Plasmodium Vivax Shmt Bound with Plp-Glycine and GS625:
2.1.2.1;

The structure of Plasmodium Vivax Shmt Bound with Plp-Glycine and GS625, PDB code: 5yfy was solved by P.Chitnumsub, A.Jaruwat, U.Leartsakulpanich, G.Schwertz, F.Diederich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.30
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	101.647, 58.804, 235.489, 90.00, 90.01, 90.00
R / Rfree (%)	21.8 / 27.6

The structure of Plasmodium Vivax Shmt Bound with Plp-Glycine and GS625 also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Chlorine atom in the Plasmodium Vivax Shmt Bound with Plp-Glycine and GS625 (pdb code 5yfy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Plasmodium Vivax Shmt Bound with Plp-Glycine and GS625, PDB code: 5yfy:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Plasmodium Vivax Shmt Bound with Plp-Glycine and GS625


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Plasmodium Vivax Shmt Bound with Plp-Glycine and GS625 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl503 b:28.4 occ:1.00 ND2 A:ASN276 3.2 17.8 1.0 NZ A:LYS277 3.3 18.4 1.0 ND2 B:ASN276 3.3 16.8 1.0 NZ B:LYS277 3.3 17.5 1.0 CG A:ASN276 4.2 18.0 1.0 CD2 B:LEU46 4.2 23.9 1.0 CE A:LYS277 4.2 18.3 1.0 CD2 A:LEU46 4.2 24.7 1.0 CE B:LYS277 4.2 17.7 1.0 CG A:LYS277 4.2 17.3 1.0 CG B:ASN276 4.3 16.9 1.0 CG B:LYS277 4.3 16.4 1.0 OD1 A:ASN276 4.4 17.0 1.0 OD1 B:ASN276 4.5 17.7 1.0 CD A:LYS277 4.9 17.8 1.0 CD B:LYS277 4.9 17.2 1.0

Chlorine binding site 2 out of 2 in the Plasmodium Vivax Shmt Bound with Plp-Glycine and GS625


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Plasmodium Vivax Shmt Bound with Plp-Glycine and GS625 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl503 b:31.4 occ:0.50 ND2 C:ASN276 3.2 16.4 1.0 NZ C:LYS277 3.4 16.8 1.0 CD2 C:LEU46 4.1 24.2 1.0 CG C:ASN276 4.2 16.7 1.0 CE C:LYS277 4.2 17.0 1.0 CG C:LYS277 4.3 16.7 1.0 OD1 C:ASN276 4.4 16.6 1.0 CD C:LYS277 5.0 17.0 1.0

P.Chitnumsub, A.Jaruwat. To Be Published To Be Published.