Chlorine in PDB 5yro: RANL182A in Complex with RANBP1-CRM1
Protein crystallography data
The structure of RANL182A in Complex with RANBP1-CRM1, PDB code: 5yro
was solved by
Q.Sun,
Y.Zhang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
40.53 /
2.40
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
105.259,
105.259,
307.425,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.7 /
24.5
|
Other elements in 5yro:
The structure of RANL182A in Complex with RANBP1-CRM1 also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the RANL182A in Complex with RANBP1-CRM1
(pdb code 5yro). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
RANL182A in Complex with RANBP1-CRM1, PDB code: 5yro:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 5yro
Go back to
Chlorine Binding Sites List in 5yro
Chlorine binding site 1 out
of 4 in the RANL182A in Complex with RANBP1-CRM1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of RANL182A in Complex with RANBP1-CRM1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1102
b:0.7
occ:1.00
|
O
|
C:HOH1211
|
3.2
|
49.0
|
1.0
|
N
|
C:GLU1009
|
3.3
|
60.8
|
1.0
|
CB
|
C:GLU1009
|
3.6
|
64.2
|
0.6
|
CB
|
C:GLU1009
|
3.6
|
64.5
|
0.4
|
N
|
C:SER1008
|
3.7
|
61.8
|
1.0
|
CB
|
C:THR1007
|
3.8
|
57.7
|
1.0
|
CB
|
C:SER1008
|
4.0
|
60.2
|
1.0
|
CA
|
C:GLU1009
|
4.0
|
63.2
|
0.6
|
CA
|
C:GLU1009
|
4.1
|
63.2
|
0.4
|
O
|
C:HOH1241
|
4.1
|
64.7
|
1.0
|
CA
|
C:SER1008
|
4.2
|
61.3
|
1.0
|
C
|
C:SER1008
|
4.2
|
59.9
|
1.0
|
OG1
|
C:THR1007
|
4.2
|
56.6
|
1.0
|
C
|
C:THR1007
|
4.4
|
59.4
|
1.0
|
OG
|
C:SER1008
|
4.5
|
63.0
|
1.0
|
CA
|
C:THR1007
|
4.6
|
57.5
|
1.0
|
CG2
|
C:THR1007
|
4.6
|
56.0
|
1.0
|
OE2
|
C:GLU1009
|
4.9
|
67.3
|
0.6
|
CG
|
C:GLU1009
|
4.9
|
66.8
|
0.6
|
CG
|
C:GLU1009
|
5.0
|
66.7
|
0.4
|
|
Chlorine binding site 2 out
of 4 in 5yro
Go back to
Chlorine Binding Sites List in 5yro
Chlorine binding site 2 out
of 4 in the RANL182A in Complex with RANBP1-CRM1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of RANL182A in Complex with RANBP1-CRM1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1103
b:0.7
occ:1.00
|
O
|
C:LYS605
|
3.0
|
67.1
|
1.0
|
CB
|
C:TYR608
|
3.4
|
70.4
|
1.0
|
N
|
C:TYR608
|
3.4
|
67.9
|
1.0
|
C
|
C:CYS606
|
3.4
|
73.5
|
1.0
|
CA
|
C:CYS606
|
3.4
|
71.7
|
1.0
|
N
|
C:LYS607
|
3.6
|
71.7
|
1.0
|
C
|
C:LYS605
|
3.7
|
66.7
|
1.0
|
N
|
C:CYS606
|
3.8
|
69.5
|
1.0
|
O
|
C:CYS606
|
3.8
|
75.3
|
1.0
|
CE
|
C:LYS567
|
4.0
|
70.4
|
1.0
|
CA
|
C:TYR608
|
4.0
|
70.0
|
1.0
|
CD2
|
C:HIS609
|
4.2
|
76.1
|
1.0
|
C
|
C:LYS607
|
4.4
|
70.6
|
1.0
|
CG
|
C:LYS607
|
4.5
|
72.3
|
1.0
|
NZ
|
C:LYS567
|
4.5
|
72.2
|
1.0
|
CD
|
C:LYS567
|
4.5
|
67.0
|
1.0
|
CA
|
C:LYS607
|
4.6
|
71.2
|
1.0
|
CG
|
C:TYR608
|
4.6
|
73.8
|
1.0
|
N
|
C:HIS609
|
4.6
|
71.4
|
1.0
|
NE2
|
C:HIS609
|
4.6
|
79.1
|
1.0
|
CB
|
C:CYS606
|
4.8
|
71.4
|
1.0
|
CG
|
C:LYS567
|
4.8
|
63.3
|
1.0
|
C
|
C:TYR608
|
4.8
|
69.7
|
1.0
|
CD2
|
C:TYR608
|
4.9
|
74.7
|
1.0
|
CA
|
C:LYS605
|
4.9
|
66.6
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 5yro
Go back to
Chlorine Binding Sites List in 5yro
Chlorine binding site 3 out
of 4 in the RANL182A in Complex with RANBP1-CRM1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of RANL182A in Complex with RANBP1-CRM1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1104
b:0.6
occ:1.00
|
OE1
|
C:GLN62
|
3.3
|
89.8
|
1.0
|
CB
|
C:ASN113
|
3.5
|
79.2
|
1.0
|
CB
|
C:PRO61
|
3.8
|
70.7
|
1.0
|
CG
|
C:GLN62
|
3.9
|
77.3
|
1.0
|
ND2
|
C:ASN113
|
4.0
|
87.6
|
1.0
|
CG2
|
A:ILE81
|
4.0
|
52.7
|
1.0
|
CD
|
C:GLN62
|
4.0
|
81.3
|
1.0
|
C
|
C:PRO61
|
4.2
|
65.8
|
1.0
|
N
|
C:LEU114
|
4.3
|
71.1
|
1.0
|
CG
|
C:ASN113
|
4.3
|
83.8
|
1.0
|
N
|
C:GLN62
|
4.4
|
61.3
|
1.0
|
O
|
C:PRO61
|
4.4
|
68.3
|
1.0
|
CD2
|
C:PHE65
|
4.4
|
61.6
|
1.0
|
CA
|
C:GLN62
|
4.5
|
66.3
|
1.0
|
CB
|
C:LEU114
|
4.6
|
66.8
|
1.0
|
C
|
C:ASN113
|
4.6
|
71.5
|
1.0
|
CA
|
C:PRO61
|
4.6
|
71.6
|
1.0
|
CA
|
C:ASN113
|
4.6
|
73.5
|
1.0
|
CD1
|
A:ILE81
|
4.7
|
57.5
|
1.0
|
CA
|
C:LEU114
|
4.8
|
68.0
|
1.0
|
CB
|
C:PHE65
|
4.8
|
60.3
|
1.0
|
CB
|
C:GLN62
|
4.9
|
71.3
|
1.0
|
CG1
|
A:ILE81
|
4.9
|
54.2
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 5yro
Go back to
Chlorine Binding Sites List in 5yro
Chlorine binding site 4 out
of 4 in the RANL182A in Complex with RANBP1-CRM1
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of RANL182A in Complex with RANBP1-CRM1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1105
b:99.5
occ:1.00
|
CD1
|
C:TYR228
|
3.7
|
70.3
|
1.0
|
CE1
|
C:TYR228
|
3.7
|
70.4
|
1.0
|
NH1
|
C:ARG227
|
3.8
|
81.1
|
1.0
|
CG2
|
C:THR232
|
4.5
|
77.1
|
1.0
|
CG
|
C:TYR228
|
4.5
|
69.3
|
1.0
|
CZ
|
C:TYR228
|
4.6
|
70.8
|
1.0
|
O
|
C:ARG227
|
4.7
|
65.0
|
1.0
|
CA
|
C:TYR228
|
4.7
|
67.6
|
1.0
|
CZ
|
C:ARG227
|
4.8
|
84.4
|
1.0
|
CG
|
C:ARG227
|
4.9
|
81.2
|
1.0
|
C
|
C:ARG227
|
4.9
|
64.8
|
1.0
|
N
|
C:TYR228
|
5.0
|
63.9
|
1.0
|
|
Reference:
Q.Sun,
Y.Zhang.
RANL182A in Complex with RANBP1-CRM1 To Be Published.
Page generated: Fri Jul 26 21:31:25 2024
|