Chlorine in PDB 5yst: RANM189D in Complex with RANBP1-CRM1

The structure of RANM189D in Complex with RANBP1-CRM1, PDB code: 5yst was solved by Q.Sun, Y.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.04
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	104.884, 104.884, 307.822, 90.00, 90.00, 90.00
R / Rfree (%)	20.9 / 23.8

The structure of RANM189D in Complex with RANBP1-CRM1 also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Chlorine atom in the RANM189D in Complex with RANBP1-CRM1 (pdb code 5yst). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the RANM189D in Complex with RANBP1-CRM1, PDB code: 5yst:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in the RANM189D in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of RANM189D in Complex with RANBP1-CRM1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl305 b:30.0 occ:1.00 O C:HOH1556 3.4 47.1 1.0 N A:ALA133 3.7 46.5 1.0 CD A:ARG129 3.8 32.8 1.0 NE A:ARG129 3.9 32.0 1.0 CD A:LYS132 3.9 61.8 1.0 NZ A:LYS134 3.9 88.8 1.0 CZ A:ARG129 4.1 33.1 1.0 CB C:SER459 4.1 42.2 1.0 CB A:ALA133 4.1 51.1 1.0 NH1 A:ARG129 4.2 29.9 1.0 CA A:LYS132 4.2 44.2 1.0 CB A:LYS132 4.4 50.0 1.0 C A:LYS132 4.5 43.2 1.0 CA A:ALA133 4.5 49.2 1.0 O C:SER459 4.6 35.9 1.0 OG C:SER459 4.7 45.1 1.0 CG A:ARG129 4.7 34.1 1.0 O C:HOH1212 4.8 46.5 1.0 NH2 A:ARG129 4.8 29.9 1.0 CG A:LYS132 4.8 56.4 1.0 C C:SER459 5.0 40.4 1.0

Chlorine binding site 2 out of 6 in the RANM189D in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of RANM189D in Complex with RANBP1-CRM1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1102 b:72.8 occ:1.00 O C:HOH1487 3.1 40.1 1.0 N C:GLU1009 3.3 37.8 1.0 CB C:THR1007 3.6 35.0 1.0 N C:SER1008 3.7 39.0 1.0 CB C:GLU1009 3.7 50.8 1.0 OG1 C:THR1007 3.9 36.5 1.0 CB C:SER1008 4.0 39.1 1.0 CA C:SER1008 4.1 39.9 1.0 CA C:GLU1009 4.1 42.2 1.0 C C:SER1008 4.2 37.3 1.0 C C:THR1007 4.3 38.0 1.0 O C:HOH1411 4.4 43.0 1.0 CA C:THR1007 4.5 34.5 1.0 CG2 C:THR1007 4.6 32.8 1.0 OG C:SER1008 4.7 45.8 1.0 O C:HOH1595 4.9 54.9 1.0 CG C:GLU1009 4.9 62.7 1.0

Chlorine binding site 3 out of 6 in the RANM189D in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of RANM189D in Complex with RANBP1-CRM1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1103 b:95.7 occ:1.00 O C:HOH1454 2.9 54.2 1.0 O C:LYS605 2.9 50.0 1.0 N C:TYR608 3.3 70.3 1.0 CB C:TYR608 3.4 75.0 1.0 N C:LYS607 3.6 60.9 1.0 C C:CYS606 3.6 58.7 1.0 C C:LYS605 3.7 48.1 1.0 CA C:CYS606 3.7 52.9 1.0 CA C:TYR608 4.0 71.6 1.0 N C:CYS606 4.0 50.3 1.0 CG C:LYS607 4.1 55.0 1.0 CE C:LYS567 4.1 67.8 1.0 O C:CYS606 4.2 60.8 1.0 C C:LYS607 4.4 67.2 1.0 CA C:LYS607 4.4 62.1 1.0 ND1 C:HIS609 4.6 82.5 1.0 CG C:TYR608 4.6 81.4 1.0 NZ C:LYS567 4.8 68.9 1.0 CB C:LYS607 4.9 57.9 1.0 CE1 C:HIS609 4.9 82.6 1.0 OE2 C:GLU654 4.9 92.5 1.0 CA C:LYS605 4.9 50.0 1.0 CE C:LYS607 5.0 55.1 1.0 N C:HIS609 5.0 74.6 1.0

Chlorine binding site 4 out of 6 in the RANM189D in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of RANM189D in Complex with RANBP1-CRM1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1104 b:77.9 occ:1.00 O C:HOH1505 3.1 45.0 1.0 NE2 C:GLN62 3.3 48.1 1.0 CB C:ASN113 3.6 53.1 1.0 O C:PRO61 3.7 38.3 1.0 C C:PRO61 3.8 40.1 1.0 CB C:PRO61 3.9 45.0 1.0 N C:LEU114 4.1 41.3 1.0 N C:GLN62 4.2 40.8 1.0 CD2 C:PHE65 4.3 36.7 1.0 CB C:PHE65 4.3 34.5 1.0 CB C:LEU114 4.3 40.6 1.0 CA C:GLN62 4.3 40.4 1.0 CG2 A:ILE81 4.4 41.5 1.0 ND2 C:ASN113 4.4 60.2 1.0 CD C:GLN62 4.4 49.5 1.0 CA C:PRO61 4.5 44.6 1.0 CA C:LEU114 4.5 41.5 1.0 C C:ASN113 4.5 44.5 1.0 CG C:ASN113 4.6 58.2 1.0 CD1 A:ILE81 4.6 40.5 1.0 CG C:GLN62 4.6 47.0 1.0 O C:HOH1462 4.7 56.7 1.0 CA C:ASN113 4.7 48.6 1.0 CG C:PHE65 4.7 36.2 1.0 CG1 A:ILE81 5.0 39.2 1.0

Chlorine binding site 5 out of 6 in the RANM189D in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of RANM189D in Complex with RANBP1-CRM1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1105 b:89.3 occ:1.00 NH1 C:ARG227 3.3 73.1 1.0 CD1 C:TYR228 4.0 46.4 1.0 CE1 C:TYR228 4.0 48.9 1.0 O C:ARG227 4.3 44.2 1.0 CG C:ARG227 4.3 67.2 1.0 C C:ARG227 4.5 45.8 1.0 CG C:TYR228 4.5 44.2 1.0 CZ C:TYR228 4.5 51.6 1.0 CZ C:ARG227 4.6 73.9 1.0 CA C:TYR228 4.6 42.6 1.0 N C:TYR228 4.6 43.6 1.0 CB C:ARG227 4.6 59.0 1.0 CD C:ARG227 4.6 76.2 1.0 CG2 C:THR232 4.7 41.2 1.0 OE1 C:GLU191 4.8 86.9 1.0 OE1 C:GLU231 4.9 65.7 1.0 CD2 C:TYR228 5.0 46.3 1.0 CE2 C:TYR228 5.0 49.0 1.0

Chlorine binding site 6 out of 6 in the RANM189D in Complex with RANBP1-CRM1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of RANM189D in Complex with RANBP1-CRM1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1106 b:83.6 occ:1.00 O C:HOH1548 3.3 53.1 1.0 OD1 C:ASP887 3.5 48.8 1.0 OE2 C:GLU938 3.9 58.5 1.0 CG C:ASP887 4.3 46.2 1.0 CG2 C:ILE934 4.4 37.2 1.0 CD C:GLU938 4.5 48.7 1.0 CA C:ASP887 4.6 36.7 1.0 CB C:CYS890 4.7 42.1 1.0 SG C:CYS890 4.8 42.7 1.0 CG C:GLU938 4.8 41.5 1.0 CB C:ASP887 4.9 41.7 1.0 O C:HOH1472 5.0 50.0 1.0

Q.Sun, Y.Zhang. RANM189D in Complex with RANBP1-CRM1 To Be Published.