Chlorine in PDB 5ysu: Plumbagin in Complex with CRM1-RANM189D-RANBP1

The structure of Plumbagin in Complex with CRM1-RANM189D-RANBP1, PDB code: 5ysu was solved by Q.Sun, Y.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.01 / 2.30
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	105.063, 105.063, 306.534, 90.00, 90.00, 90.00
R / Rfree (%)	21.6 / 24.3

The structure of Plumbagin in Complex with CRM1-RANM189D-RANBP1 also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Sodium	(Na)	1 atom

The binding sites of Chlorine atom in the Plumbagin in Complex with CRM1-RANM189D-RANBP1 (pdb code 5ysu). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Plumbagin in Complex with CRM1-RANM189D-RANBP1, PDB code: 5ysu:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Plumbagin in Complex with CRM1-RANM189D-RANBP1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Plumbagin in Complex with CRM1-RANM189D-RANBP1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:97.1 occ:1.00 O A:HOH461 2.8 81.3 1.0 N A:ALA133 3.5 68.5 1.0 O C:HOH1336 3.6 74.1 1.0 NE A:ARG129 3.7 60.8 1.0 CD A:ARG129 3.7 62.1 1.0 CZ A:ARG129 3.9 59.8 1.0 CD A:LYS132 4.0 74.9 1.0 NH1 A:ARG129 4.0 59.8 1.0 CA A:LYS132 4.0 67.2 1.0 CB A:ALA133 4.1 70.6 1.0 CB C:SER459 4.2 68.0 1.0 C A:LYS132 4.3 67.2 1.0 CA A:ALA133 4.4 68.7 1.0 CB A:LYS132 4.4 70.2 1.0 O C:HOH1383 4.4 62.4 1.0 NH2 A:ARG129 4.5 59.6 1.0 OG C:SER459 4.7 68.8 1.0 CG A:ARG129 4.7 62.4 1.0 O C:SER459 4.7 66.4 1.0 CG A:LYS132 4.8 73.1 1.0

Chlorine binding site 2 out of 2 in the Plumbagin in Complex with CRM1-RANM189D-RANBP1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Plumbagin in Complex with CRM1-RANM189D-RANBP1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1103 b:94.5 occ:1.00 NH2 C:ARG77 3.2 89.5 1.0 CZ C:ARG77 4.0 88.2 1.0 O C:LYS1040 4.0 64.7 1.0 O C:ILE1039 4.2 64.5 1.0 C C:LYS1040 4.2 64.0 1.0 NE C:ARG77 4.2 86.6 1.0 CE1 C:HIS1005 4.3 62.4 1.0 NE2 C:HIS1005 4.4 61.9 1.0 N C:GLU1041 4.5 63.7 1.0 ND1 C:HIS1005 4.5 63.5 1.0 CD2 C:HIS1005 4.6 63.0 1.0 CA C:GLU1041 4.6 64.1 1.0 CG C:HIS1005 4.7 63.5 1.0 CA C:LYS1040 4.7 63.9 1.0 C C:GLU1041 4.7 63.9 1.0 O C:ARG77 4.8 78.5 1.0 O C:GLU1041 4.8 64.0 1.0 NH1 C:ARG77 4.9 88.7 1.0 CG2 C:VAL1042 5.0 65.7 1.0

Q.Sun, Y.Zhang. RANL182A in Complex with RANBP1-CRM1 To Be Published.