Chlorine in PDB 5yy4: Crystal Structure of the Scfv Antibody 4B08 with Sulfated Epitope Peptide

The structure of Crystal Structure of the Scfv Antibody 4B08 with Sulfated Epitope Peptide, PDB code: 5yy4 was solved by J.M.M.Caaveiro, K.Miyanabe, K.Tsumoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.47 / 1.59
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	45.250, 56.610, 97.920, 90.00, 90.00, 90.00
R / Rfree (%)	15.7 / 19.4

The binding sites of Chlorine atom in the Crystal Structure of the Scfv Antibody 4B08 with Sulfated Epitope Peptide (pdb code 5yy4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Scfv Antibody 4B08 with Sulfated Epitope Peptide, PDB code: 5yy4:

Chlorine binding site 1 out of 1 in the Crystal Structure of the Scfv Antibody 4B08 with Sulfated Epitope Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Scfv Antibody 4B08 with Sulfated Epitope Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl303 b:48.1 occ:1.00 O A:HOH596 2.5 39.5 1.0 OG A:SER140 3.0 17.5 0.5 N A:SER140 3.5 14.5 1.0 N A:GLY138 3.6 21.3 1.0 N A:GLY139 3.6 14.5 1.0 CA A:GLY138 3.6 18.2 1.0 CB A:SER140 3.7 16.4 0.5 OG A:SER140 3.8 17.3 0.5 C A:GLY138 3.8 17.0 1.0 CB A:SER140 3.9 16.6 0.5 O A:HOH499 4.0 21.8 1.0 CA A:SER140 4.2 15.1 0.5 CA A:SER140 4.3 15.1 0.5 C A:GLY139 4.5 14.3 1.0 CA A:GLY139 4.5 14.6 1.0 O A:GLY138 4.6 15.6 1.0 OD1 A:ASP141 4.7 17.8 1.0 C A:GLY137 4.8 24.3 1.0 N A:ASP141 4.9 13.6 1.0 C A:SER140 4.9 14.4 1.0

K.Miyanabe, T.Yamashita, Y.Abe, H.Akiba, Y.Takamatsu, M.Nakakido, T.Hamakubo, T.Ueda, J.M.M.Caaveiro, K.Tsumoto. Tyrosine Sulfation Restricts the Conformational Ensemble of A Flexible Peptide, Strengthening the Binding Affinity For An Antibody Biochemistry V. 57 4177 2018.
ISSN: ISSN 1520-4995
PubMed: 29936828
DOI: 10.1021/ACS.BIOCHEM.8B00592