Atomistry » Chlorine » PDB 5z42-5zkn » 5z42
Atomistry »
  Chlorine »
    PDB 5z42-5zkn »
      5z42 »

Chlorine in PDB 5z42: Aquifex Aeolicus Mutl Endonuclease Domain with Three Zinc Ions.

Protein crystallography data

The structure of Aquifex Aeolicus Mutl Endonuclease Domain with Three Zinc Ions., PDB code: 5z42 was solved by K.Fukui, T.Yano, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.79 / 1.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 35.623, 35.623, 167.918, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 20.4

Other elements in 5z42:

The structure of Aquifex Aeolicus Mutl Endonuclease Domain with Three Zinc Ions. also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 5 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Aquifex Aeolicus Mutl Endonuclease Domain with Three Zinc Ions. (pdb code 5z42). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Aquifex Aeolicus Mutl Endonuclease Domain with Three Zinc Ions., PDB code: 5z42:

Chlorine binding site 1 out of 1 in 5z42

Go back to Chlorine Binding Sites List in 5z42
Chlorine binding site 1 out of 1 in the Aquifex Aeolicus Mutl Endonuclease Domain with Three Zinc Ions.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Aquifex Aeolicus Mutl Endonuclease Domain with Three Zinc Ions. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:20.9
occ:1.00
O A:HOH408 3.2 27.1 1.0
N A:ALA54 3.2 18.0 1.0
CG A:HIS30 3.8 16.3 1.0
CB A:HIS30 3.8 15.6 1.0
CA A:LYS53 3.9 17.8 1.0
CB A:ALA54 3.9 22.1 1.0
CB A:LYS53 4.0 21.8 1.0
C A:LYS53 4.1 18.6 1.0
CA A:ALA54 4.2 18.4 1.0
ND1 A:HIS30 4.2 16.8 1.0
CD2 A:HIS30 4.2 16.6 1.0
CG A:LYS53 4.4 21.9 1.0
CE1 A:HIS30 4.8 18.2 1.0
NE2 A:HIS30 4.8 18.1 1.0
O A:HOH379 4.9 22.4 1.0
O A:ALA54 4.9 20.3 1.0
O A:HOH318 5.0 19.4 1.0

Reference:

K.Fukui, S.Baba, T.Kumasaka, T.Yano. Multiple Zinc Ions Maintain the Open Conformation of the Catalytic Site in the Dna Mismatch Repair Endonuclease Mutl From Aquifex Aeolicus Febs Lett. V. 592 1611 2018.
ISSN: ISSN 1873-3468
PubMed: 29645090
DOI: 10.1002/1873-3468.13050
Page generated: Fri Jul 26 21:40:23 2024

Last articles

Ca in 2VSI
Ca in 2VR0
Ca in 2VS7
Ca in 2VSH
Ca in 2VSF
Ca in 2VRJ
Ca in 2VRG
Ca in 2VQ0
Ca in 2VQY
Ca in 2VQR
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy