Chlorine in PDB 5zb0: Crystal Structure of Thymidylate Kinase in Complex with Adp and Tdp From Thermus Thermophilus HB8

Enzymatic activity of Crystal Structure of Thymidylate Kinase in Complex with Adp and Tdp From Thermus Thermophilus HB8

All present enzymatic activity of Crystal Structure of Thymidylate Kinase in Complex with Adp and Tdp From Thermus Thermophilus HB8:
2.7.4.9;

Protein crystallography data

The structure of Crystal Structure of Thymidylate Kinase in Complex with Adp and Tdp From Thermus Thermophilus HB8, PDB code: 5zb0 was solved by S.K.Chaudhary, J.Jeyakanthan, K.Sekar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	50.01 / 1.19
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	46.871, 47.385, 151.987, 90.00, 90.00, 90.00
*R / R_free (%)*	12.9 / 15.3

Other elements in 5zb0:

The structure of Crystal Structure of Thymidylate Kinase in Complex with Adp and Tdp From Thermus Thermophilus HB8 also contains other interesting chemical elements:

Magnesium

(Mg)

8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Thymidylate Kinase in Complex with Adp and Tdp From Thermus Thermophilus HB8 (pdb code 5zb0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Thymidylate Kinase in Complex with Adp and Tdp From Thermus Thermophilus HB8, PDB code: 5zb0:

Chlorine binding site 1 out of 1 in 5zb0

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Chlorine Binding Sites List in 5zb0

Chlorine binding site 1 out of 1 in the Crystal Structure of Thymidylate Kinase in Complex with Adp and Tdp From Thermus Thermophilus HB8

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Thymidylate Kinase in Complex with Adp and Tdp From Thermus Thermophilus HB8 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl207 b:17.1 occ:1.00	O	A:HOH456	3.0	18.3	1.0
	N	A:GLY171	3.2	12.2	1.0
	O	A:HOH309	3.2	22.0	1.0
	C	A:GLU169	3.3	10.0	1.0
	N	A:ARG172	3.3	10.0	1.0
	CA	A:GLU169	3.4	10.3	1.0
	CA	A:GLY171	3.6	13.1	1.0
	CB	A:GLU169	3.6	10.7	1.0
	N	A:PRO170	3.7	11.0	1.0
	O	A:GLU169	3.7	10.5	1.0
	C	A:GLY171	3.9	12.1	1.0
	CD	A:PRO170	4.1	12.4	1.0
	CB	A:ARG172	4.1	9.2	1.0
	CG	A:GLU169	4.2	11.5	1.0
	C	A:PRO170	4.3	12.6	1.0
	CA	A:ARG172	4.3	8.9	1.0
	CA	A:PRO170	4.6	12.3	1.0
	OE1	A:GLU169	4.8	14.6	1.0
	N	A:GLU169	4.8	10.3	1.0
	CG	A:PRO170	4.9	13.9	1.0

Reference:

S.K.Chaudhary, Y.Iyyappan, M.Elayappan, J.Jeyakanthan, K.Sekar. Insights Into Product Release Dynamics Through Structural Analyses of Thymidylate Kinase. Int. J. Biol. Macromol. V. 123 637 2018.
ISSN: ISSN 1879-0003
PubMed: 30447376
DOI: 10.1016/J.IJBIOMAC.2018.11.025

Page generated: Fri Jul 26 21:41:27 2024

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