Chlorine in PDB 5zc7: Crystal Structure of Aprt From Y. Pseudotuberculosis with Bound Adenine (P63 Space Group).

Enzymatic activity of Crystal Structure of Aprt From Y. Pseudotuberculosis with Bound Adenine (P63 Space Group).

All present enzymatic activity of Crystal Structure of Aprt From Y. Pseudotuberculosis with Bound Adenine (P63 Space Group).:
2.4.2.7;

Protein crystallography data

The structure of Crystal Structure of Aprt From Y. Pseudotuberculosis with Bound Adenine (P63 Space Group)., PDB code: 5zc7 was solved by G.C.Pavithra, U.A.Ramagopal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.00
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 121.074, 121.074, 50.035, 90.00, 90.00, 120.00
R / Rfree (%) 16 / 19.2

Other elements in 5zc7:

The structure of Crystal Structure of Aprt From Y. Pseudotuberculosis with Bound Adenine (P63 Space Group). also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Aprt From Y. Pseudotuberculosis with Bound Adenine (P63 Space Group). (pdb code 5zc7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Aprt From Y. Pseudotuberculosis with Bound Adenine (P63 Space Group)., PDB code: 5zc7:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5zc7

Go back to Chlorine Binding Sites List in 5zc7
Chlorine binding site 1 out of 3 in the Crystal Structure of Aprt From Y. Pseudotuberculosis with Bound Adenine (P63 Space Group).


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Aprt From Y. Pseudotuberculosis with Bound Adenine (P63 Space Group). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:41.6
occ:1.00
 N A:ALA69 3.2 26.8 1.0
NH2 B:ARG90 3.2 33.4 1.0
N A:ARG70 3.2 24.5 1.0
NH1 B:ARG90 3.7 38.6 1.0
CA A:ALA69 3.8 27.4 1.0
CZ B:ARG90 3.9 33.8 1.0
CB A:ALA69 3.9 28.3 1.0
CG A:ARG70 3.9 30.6 1.0
CB A:ARG70 4.0 27.9 1.0
C A:ALA69 4.0 24.5 1.0
C A:GLU68 4.2 28.0 1.0
CA A:ARG70 4.2 25.9 1.0
O A:GLU68 4.2 25.9 1.0
NE A:ARG70 4.2 37.4 1.0
CZ A:ARG70 4.3 42.0 1.0
O A:HOH307 4.3 25.4 1.0
NH2 A:ARG70 4.4 42.2 1.0
CD A:ARG70 4.7 35.1 1.0
NH1 A:ARG70 4.8 45.3 1.0

Chlorine binding site 2 out of 3 in 5zc7

Go back to Chlorine Binding Sites List in 5zc7
Chlorine binding site 2 out of 3 in the Crystal Structure of Aprt From Y. Pseudotuberculosis with Bound Adenine (P63 Space Group).


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Aprt From Y. Pseudotuberculosis with Bound Adenine (P63 Space Group). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:53.3
occ:0.33
 NI A:NI200 2.3 16.7 0.3
NE2 A:HIS177 3.5 16.9 1.0
CD2 A:HIS177 4.0 15.6 1.0
CE1 A:HIS177 4.6 17.3 1.0
CG2 A:VAL154 4.7 22.1 1.0

Chlorine binding site 3 out of 3 in 5zc7

Go back to Chlorine Binding Sites List in 5zc7
Chlorine binding site 3 out of 3 in the Crystal Structure of Aprt From Y. Pseudotuberculosis with Bound Adenine (P63 Space Group).


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Aprt From Y. Pseudotuberculosis with Bound Adenine (P63 Space Group). within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl203

b:40.1
occ:1.00
 O B:HOH358 2.9 43.6 1.0
NH2 A:ARG90 3.2 31.6 1.0
N B:ARG70 3.3 28.6 1.0
N B:ALA69 3.3 29.2 1.0
NH1 A:ARG90 3.7 37.6 1.0
CZ A:ARG90 3.9 31.6 1.0
CB B:ALA69 4.0 29.9 1.0
CA B:ALA69 4.0 29.1 1.0
NH2 B:ARG70 4.0 50.2 1.0
CZ B:ARG70 4.0 53.1 1.0
CB B:ARG70 4.1 36.4 1.0
C B:ALA69 4.1 28.6 1.0
NE B:ARG70 4.2 51.0 1.0
CG B:ARG70 4.2 43.4 1.0
C B:GLU68 4.2 30.3 1.0
CA B:ARG70 4.2 33.0 1.0
O B:GLU68 4.3 26.9 1.0
O B:HOH341 4.3 30.0 1.0
NH1 B:ARG70 4.6 52.6 1.0
CD B:ARG70 4.8 48.1 1.0

Reference:

G.C.Pavithra, U.A.Ramagopal. Crystal Structure of Adenine Phosphoribosyltransferase From Yersinia Pseudotuberculosis To Be Published.
Page generated: Sat Dec 12 12:41:59 2020

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