Chlorine in PDB 5zdl: Crystal Structure Analysis of Ttqrs in Co-Crystallised with Atp

All present enzymatic activity of Crystal Structure Analysis of Ttqrs in Co-Crystallised with Atp:
6.1.1.18;

The structure of Crystal Structure Analysis of Ttqrs in Co-Crystallised with Atp, PDB code: 5zdl was solved by N.Mutharasappan, V.Jain, A.Sharma, Y.Manickam, J.Jeyaraman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.19 / 2.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	145.084, 39.363, 114.846, 90.00, 116.80, 90.00
R / Rfree (%)	22 / 28.7

The binding sites of Chlorine atom in the Crystal Structure Analysis of Ttqrs in Co-Crystallised with Atp (pdb code 5zdl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure Analysis of Ttqrs in Co-Crystallised with Atp, PDB code: 5zdl:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Crystal Structure Analysis of Ttqrs in Co-Crystallised with Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure Analysis of Ttqrs in Co-Crystallised with Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl602 b:40.0 occ:0.80 NH1 A:ARG411 3.4 48.4 1.0 N A:HIS412 3.5 48.3 1.0 CD A:ARG411 3.7 46.1 1.0 CG A:ARG409 3.8 52.1 1.0 CG1 A:VAL453 3.9 53.3 1.0 CA A:ARG411 3.9 45.2 1.0 CD A:ARG409 4.0 52.5 1.0 C A:ARG411 4.3 46.0 1.0 CA A:HIS412 4.3 48.0 1.0 CZ A:ARG411 4.4 47.5 1.0 CG2 A:VAL453 4.5 56.2 1.0 O A:LEU410 4.5 46.8 1.0 NE A:ARG411 4.5 46.4 1.0 CG A:ARG411 4.6 45.1 1.0 CD2 A:HIS412 4.6 52.9 1.0 CB A:ARG411 4.6 44.9 1.0 NE A:ARG409 4.7 54.8 1.0 CB A:VAL453 4.8 55.1 1.0 N A:ARG411 4.9 44.5 1.0

Chlorine binding site 2 out of 4 in the Crystal Structure Analysis of Ttqrs in Co-Crystallised with Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure Analysis of Ttqrs in Co-Crystallised with Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl603 b:55.3 occ:1.00 CB A:PRO367 3.8 61.5 1.0 N A:ARG368 3.9 60.4 0.7 CA A:PRO367 4.1 60.7 1.0 NH2 A:ARG411 4.1 47.0 1.0 C A:PRO367 4.5 60.4 1.0 CB A:ARG368 4.6 62.8 0.7 CG A:PRO367 4.8 61.3 1.0 NH1 A:ARG411 4.9 48.4 1.0 CA A:ARG368 4.9 62.5 0.7 CZ A:ARG411 5.0 47.5 1.0

Chlorine binding site 3 out of 4 in the Crystal Structure Analysis of Ttqrs in Co-Crystallised with Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure Analysis of Ttqrs in Co-Crystallised with Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl604 b:55.3 occ:1.00 NE2 A:HIS253 3.4 58.3 1.0 CE1 A:HIS253 3.8 58.1 1.0 CG A:ARG251 3.8 51.5 1.0 CD A:ARG251 3.9 54.2 1.0 NZ A:LYS21 4.6 78.8 1.0 CD2 A:HIS253 4.7 54.3 1.0 NE A:ARG251 4.7 56.0 1.0 CE A:LYS21 4.8 79.4 1.0

Chlorine binding site 4 out of 4 in the Crystal Structure Analysis of Ttqrs in Co-Crystallised with Atp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure Analysis of Ttqrs in Co-Crystallised with Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl605 b:65.5 occ:1.00 NH2 A:ARG460 3.7 63.4 1.0 N A:GLY357 3.7 59.3 1.0 NH1 A:ARG460 3.8 61.6 1.0 CZ A:ARG460 4.3 60.4 1.0 CA A:GLY357 4.5 60.0 1.0 CA A:GLU356 4.5 57.6 1.0 CB A:GLU356 4.5 59.0 1.0 CG A:PRO382 4.6 56.7 1.0 C A:GLU356 4.6 57.3 1.0

M.Nachiappan, V.Jain, A.Sharma, M.Yogavel, J.Jeyakanthan. Structural and Functional Analysis of Glutaminyl-Trna Synthetase (Ttglnrs) From Thermus Thermophilus HB8 and Its Complexes Int. J. Biol. Macromol. V. 120 1379 2018.
ISSN: ISSN 1879-0003
PubMed: 30248426
DOI: 10.1016/J.IJBIOMAC.2018.09.115