Chlorine in PDB 5zi2: MDH3 Wild Type, Nad-Form

All present enzymatic activity of MDH3 Wild Type, Nad-Form:
1.1.1.37;

The structure of MDH3 Wild Type, Nad-Form, PDB code: 5zi2 was solved by S.Moriyama, K.Nishio, T.Mizushima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	45.099, 92.559, 82.114, 90.00, 99.88, 90.00
R / Rfree (%)	17.5 / 23

The binding sites of Chlorine atom in the MDH3 Wild Type, Nad-Form (pdb code 5zi2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the MDH3 Wild Type, Nad-Form, PDB code: 5zi2:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the MDH3 Wild Type, Nad-Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of MDH3 Wild Type, Nad-Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl403 b:26.3 occ:1.00 O A:HOH557 3.2 19.0 1.0 ND2 A:ASN110 3.3 20.0 1.0 N A:ASN110 3.5 19.9 1.0 CA A:ALA108 3.6 22.6 1.0 CB A:ASN110 3.6 20.4 1.0 C A:ALA108 3.6 22.3 1.0 N A:PRO109 3.7 21.6 1.0 CD A:PRO109 3.7 22.7 1.0 CG A:ASN110 3.9 21.5 1.0 CA A:ASN110 4.1 20.7 1.0 CB A:ALA108 4.3 22.3 1.0 O A:ALA108 4.3 19.9 1.0 CG A:PRO109 4.4 22.9 1.0 C A:PRO109 4.5 19.4 1.0 CA A:PRO109 4.6 20.6 1.0 O A:PHE107 4.7 24.4 1.0 C A:ASN110 4.7 22.2 1.0 N A:ALA111 4.8 19.2 1.0 N A:ALA108 4.8 22.3 1.0

Chlorine binding site 2 out of 2 in the MDH3 Wild Type, Nad-Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of MDH3 Wild Type, Nad-Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl401 b:27.2 occ:1.00 ND2 B:ASN110 3.2 25.3 1.0 O B:HOH533 3.2 25.8 1.0 O B:HOH547 3.3 26.3 1.0 N B:ASN110 3.5 20.9 1.0 CA B:ALA108 3.5 23.5 1.0 C B:ALA108 3.6 24.2 1.0 CB B:ASN110 3.7 21.6 1.0 N B:PRO109 3.7 23.8 1.0 CD B:PRO109 3.8 24.5 1.0 CG B:ASN110 3.9 25.6 1.0 CA B:ASN110 4.1 22.1 1.0 CB B:ALA108 4.1 24.8 1.0 O B:ALA108 4.3 24.3 1.0 CG B:PRO109 4.4 24.6 1.0 C B:PRO109 4.5 21.4 1.0 CA B:PRO109 4.6 23.1 1.0 N B:ALA108 4.7 23.9 1.0 O B:PHE107 4.7 24.2 1.0 C B:ASN110 4.8 23.7 1.0 N B:ALA111 4.8 21.5 1.0 O B:HOH577 4.9 33.9 1.0 O B:ALA69 4.9 24.3 1.0

S.Moriyama, K.Nishio, T.Mizushima. Structure of Glyoxysomal Malate Dehydrogenase (MDH3) From Saccharomyces Cerevisiae. Acta Crystallogr F Struct V. 74 617 2018BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 30279312
DOI: 10.1107/S2053230X18011895