Chlorine in PDB 5zm0: X-Ray Structure of Animal-Like Cryptochrome From Chlamydomonas Reinhardtii

The structure of X-Ray Structure of Animal-Like Cryptochrome From Chlamydomonas Reinhardtii, PDB code: 5zm0 was solved by S.Franz, E.Ignatz, S.Wenzel, H.Zielosko, E.P.Gusti Ngurah Putu, M.Maestre-Reyna, M.-D.Tsai, J.Yamamoto, M.Mittag, L.-O.Essen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.76 / 1.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.210, 65.120, 151.980, 90.00, 90.00, 90.00
R / Rfree (%)	15.3 / 18.8

The binding sites of Chlorine atom in the X-Ray Structure of Animal-Like Cryptochrome From Chlamydomonas Reinhardtii (pdb code 5zm0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the X-Ray Structure of Animal-Like Cryptochrome From Chlamydomonas Reinhardtii, PDB code: 5zm0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the X-Ray Structure of Animal-Like Cryptochrome From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Structure of Animal-Like Cryptochrome From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl611 b:9.8 occ:1.00 O A:HOH1439 3.0 20.0 1.0 O A:HOH1017 3.0 9.7 1.0 NE1 A:TRP294 3.3 8.8 1.0 O A:PRO285 3.5 8.6 1.0 NE2 A:GLN291 3.6 5.1 1.0 CA A:VAL286 3.6 5.9 1.0 C A:PRO285 3.7 7.3 1.0 CB A:LYS237 3.9 6.3 1.0 N A:VAL286 3.9 6.7 1.0 CG A:PRO238 4.0 11.9 1.0 CD A:PRO238 4.0 4.8 1.0 CG1 A:VAL286 4.1 8.7 1.0 CB A:PRO285 4.2 10.4 1.0 CE2 A:TRP294 4.2 5.9 1.0 CG A:LYS237 4.2 6.9 1.0 CD1 A:TRP294 4.3 10.5 1.0 CB A:VAL286 4.4 6.4 1.0 CZ2 A:TRP294 4.4 9.4 1.0 OE1 A:GLN291 4.4 3.7 1.0 CG A:PRO285 4.4 8.7 1.0 CD A:GLN291 4.5 4.3 1.0 O A:HOH995 4.5 7.0 1.0 CA A:PRO285 4.6 7.0 1.0 C A:VAL286 4.6 6.2 1.0 O A:VAL286 4.8 6.2 1.0 N A:PRO238 4.9 6.1 1.0 O A:HOH1406 5.0 28.3 1.0 O A:HOH1290 5.0 8.6 1.0

Chlorine binding site 2 out of 2 in the X-Ray Structure of Animal-Like Cryptochrome From Chlamydomonas Reinhardtii


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Structure of Animal-Like Cryptochrome From Chlamydomonas Reinhardtii within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl612 b:25.7 occ:1.00 O A:HOH1415 3.2 43.6 1.0 N A:SER416 3.4 8.1 1.0 CA A:TYR415 3.9 9.4 1.0 NH2 A:ARG413 3.9 18.0 1.0 NH1 A:ARG413 4.0 18.9 1.0 CD1 A:PHE420 4.0 26.5 1.0 CB A:SER416 4.1 7.9 1.0 C A:TYR415 4.1 10.5 1.0 CB A:PHE420 4.3 9.9 1.0 CA A:SER416 4.3 7.4 1.0 CA A:PHE420 4.3 8.9 1.0 CZ A:ARG413 4.4 13.7 1.0 N A:PHE420 4.5 10.0 1.0 CB A:TYR415 4.5 7.0 1.0 O A:VAL414 4.6 9.7 1.0 CG A:PHE420 4.6 10.3 1.0 CD1 A:TYR415 4.6 19.3 1.0 O A:SER416 4.7 7.0 1.0 O A:HOH1097 4.9 23.3 1.0 CE1 A:PHE420 5.0 32.5 1.0 N A:TYR415 5.0 7.2 1.0 CG1 A:VAL419 5.0 28.6 1.0

S.Franz, E.Ignatz, S.Wenzel, H.Zielosko, E.P.G.N.Putu, M.Maestre-Reyna, M.D.Tsai, J.Yamamoto, M.Mittag, L.O.Essen. Structure of the Bifunctional Cryptochrome Acry From Chlamydomonas Reinhardtii Nucleic Acids Res. V. 46 8010 2018.
ISSN: ESSN 1362-4962
PubMed: 30032195
DOI: 10.1093/NAR/GKY621