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Chlorine in PDB 5zur: Achromobacter DH1F Bacterioferritin

Protein crystallography data

The structure of Achromobacter DH1F Bacterioferritin, PDB code: 5zur was solved by A.Dwivedy, B.Jha, K.H.Singh, M.Ahmed, A.Ashraf, D.Kumar, B.K.Biswal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.70 / 1.95
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 158.665, 158.665, 118.061, 90.00, 90.00, 90.00
R / Rfree (%) 14.2 / 18.7

Other elements in 5zur:

The structure of Achromobacter DH1F Bacterioferritin also contains other interesting chemical elements:

Barium (Ba) 3 atoms
Iron (Fe) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Achromobacter DH1F Bacterioferritin (pdb code 5zur). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Achromobacter DH1F Bacterioferritin, PDB code: 5zur:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5zur

Go back to Chlorine Binding Sites List in 5zur
Chlorine binding site 1 out of 3 in the Achromobacter DH1F Bacterioferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Achromobacter DH1F Bacterioferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:66.1
occ:0.25
O A:HOH507 2.6 55.2 1.0
OE1 A:GLN151 4.1 9.4 1.0
CD A:GLN151 4.2 9.6 1.0
NE2 A:GLN151 4.2 10.5 1.0
BA A:BA205 4.6 12.5 0.2
CG A:GLN151 4.9 10.1 1.0

Chlorine binding site 2 out of 3 in 5zur

Go back to Chlorine Binding Sites List in 5zur
Chlorine binding site 2 out of 3 in the Achromobacter DH1F Bacterioferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Achromobacter DH1F Bacterioferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl205

b:66.5
occ:0.25
NE2 B:GLN151 4.2 10.5 1.0
CD B:GLN151 4.2 11.3 1.0
OE1 B:GLN151 4.3 10.4 1.0
CG B:GLN151 4.9 11.6 1.0

Chlorine binding site 3 out of 3 in 5zur

Go back to Chlorine Binding Sites List in 5zur
Chlorine binding site 3 out of 3 in the Achromobacter DH1F Bacterioferritin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Achromobacter DH1F Bacterioferritin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl205

b:66.1
occ:0.25
O C:HOH455 3.5 62.1 1.0
OE1 C:GLN151 4.1 10.6 1.0
NE2 C:GLN151 4.1 9.7 1.0
CD C:GLN151 4.2 10.3 1.0
CG C:GLN151 4.9 10.9 1.0

Reference:

A.Dwivedy, B.Jha, K.H.Singh, M.Ahmad, A.Ashraf, D.Kumar, B.K.Biswal. Serendipitous Crystallization and Structure Determination of Bacterioferritin From Achromobacter. Acta Crystallogr F Struct V. 74 558 2018BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 30198888
DOI: 10.1107/S2053230X18009809
Page generated: Sat Jul 12 11:12:48 2025

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