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Chlorine in PDB 6adf: Structure of Hewl Co-Crystallised with Temed

Enzymatic activity of Structure of Hewl Co-Crystallised with Temed

All present enzymatic activity of Structure of Hewl Co-Crystallised with Temed:
3.2.1.17;

Protein crystallography data

The structure of Structure of Hewl Co-Crystallised with Temed, PDB code: 6adf was solved by A.Seyedarabi, Z.Seraj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.49 / 1.08
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.471, 78.471, 37.020, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 17.6

Other elements in 6adf:

The structure of Structure of Hewl Co-Crystallised with Temed also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Hewl Co-Crystallised with Temed (pdb code 6adf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of Hewl Co-Crystallised with Temed, PDB code: 6adf:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6adf

Go back to Chlorine Binding Sites List in 6adf
Chlorine binding site 1 out of 3 in the Structure of Hewl Co-Crystallised with Temed


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Hewl Co-Crystallised with Temed within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:9.4
occ:1.00
OH A:TYR23 3.1 7.5 1.0
O A:HOH408 3.2 19.4 1.0
O A:HOH376 3.2 9.2 1.0
CE2 A:TYR23 3.7 6.7 1.0
CZ A:TYR23 3.7 6.4 1.0
CA A:GLY104 4.1 7.3 1.0
O A:ARG21 4.5 9.8 1.0
N A:GLY104 4.7 7.3 1.0
CE1 A:TYR23 4.9 6.4 1.0
CD2 A:TYR23 4.9 6.3 1.0

Chlorine binding site 2 out of 3 in 6adf

Go back to Chlorine Binding Sites List in 6adf
Chlorine binding site 2 out of 3 in the Structure of Hewl Co-Crystallised with Temed


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Hewl Co-Crystallised with Temed within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:15.1
occ:1.00
O A:HOH456 3.0 39.4 1.0
OG A:SER24 3.1 14.0 1.0
N A:GLY26 3.1 7.8 1.0
CB A:SER24 3.5 10.7 1.0
CA A:GLY26 3.5 8.0 1.0
CA A:GLN121 3.6 12.9 1.0
CB A:GLN121 3.8 16.1 1.0
CD1 A:ILE124 3.8 22.3 1.0
N A:GLN121 4.0 11.5 1.0
CG A:GLN121 4.1 21.6 1.0
N A:LEU25 4.1 8.3 1.0
C A:LEU25 4.2 7.8 1.0
CG1 A:ILE124 4.3 15.4 1.0
C A:SER24 4.3 8.0 1.0
CG2 A:VAL120 4.3 12.7 1.0
O A:VAL120 4.3 10.4 1.0
C A:VAL120 4.3 10.4 1.0
C A:GLY26 4.5 6.9 1.0
CA A:SER24 4.6 8.9 1.0
CA A:LEU25 4.7 8.2 1.0
N A:ASN27 4.7 6.4 1.0
O A:SER24 4.7 9.1 1.0
O A:HOH441 4.8 28.9 1.0
C A:GLN121 4.8 11.9 1.0
CB A:LEU25 5.0 9.0 1.0

Chlorine binding site 3 out of 3 in 6adf

Go back to Chlorine Binding Sites List in 6adf
Chlorine binding site 3 out of 3 in the Structure of Hewl Co-Crystallised with Temed


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Hewl Co-Crystallised with Temed within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:9.7
occ:1.00
O A:HOH496 3.1 16.5 1.0
O A:HOH440 3.1 14.3 1.0
O A:HOH368 3.1 7.9 1.0
N A:THR69 3.3 7.5 1.0
O A:HOH360 3.3 19.8 1.0
O A:THR69 3.4 8.4 1.0
C A:GLY67 3.5 7.3 1.0
N A:ARG68 3.5 7.6 1.0
CA A:GLY67 3.6 7.9 1.0
OG A:SER72 3.6 9.4 1.0
N A:GLY67 3.6 7.1 1.0
OD1 A:ASN65 3.7 8.7 1.0
C A:THR69 3.8 7.7 1.0
O A:HOH391 3.9 9.8 1.0
CA A:THR69 3.9 7.3 1.0
O A:GLY67 4.2 9.5 1.0
OD1 A:ASP66 4.3 6.3 1.0
CB A:THR69 4.3 7.0 1.0
C A:ARG68 4.3 8.0 1.0
CA A:ARG68 4.4 8.3 1.0
O A:HOH527 4.5 18.2 1.0
N A:PRO70 4.6 8.6 1.0
NA A:NA208 4.7 7.7 1.0
C A:ASP66 4.7 6.6 1.0
O A:HOH494 4.8 28.2 1.0
CB A:SER72 4.8 8.4 1.0
CG A:ASN65 4.9 7.9 1.0
O A:HOH358 4.9 11.4 0.5
OG1 A:THR69 4.9 7.1 1.0
N A:ASP66 4.9 6.4 1.0

Reference:

A.Seyedarabi, Z.Seraj. Structure of Hewl Co-Crystallised with Temed To Be Published.
Page generated: Sat Jul 12 11:21:35 2025

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