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Chlorine in PDB 6aqy: Crystal Structure of A Gdp-L-Fucose Synthetase From Naegleria Fowleri

Protein crystallography data

The structure of Crystal Structure of A Gdp-L-Fucose Synthetase From Naegleria Fowleri, PDB code: 6aqy was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.56 / 2.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 99.730, 102.100, 121.820, 90.00, 107.63, 90.00
R / Rfree (%) 18.6 / 24

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Gdp-L-Fucose Synthetase From Naegleria Fowleri (pdb code 6aqy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Gdp-L-Fucose Synthetase From Naegleria Fowleri, PDB code: 6aqy:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6aqy

Go back to Chlorine Binding Sites List in 6aqy
Chlorine binding site 1 out of 2 in the Crystal Structure of A Gdp-L-Fucose Synthetase From Naegleria Fowleri


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Gdp-L-Fucose Synthetase From Naegleria Fowleri within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:0.8
occ:1.00
N A:VAL199 3.5 60.1 1.0
ND1 A:HIS198 3.7 72.2 1.0
CB A:HIS198 3.7 64.8 1.0
CA A:HIS198 3.8 61.5 1.0
CG1 A:VAL199 3.9 63.5 1.0
CG A:HIS198 4.1 71.2 1.0
C A:HIS198 4.2 65.1 1.0
CB A:VAL199 4.3 63.5 1.0
O3 A:SO4401 4.5 0.9 1.0
CA A:VAL199 4.5 65.2 1.0
CE1 A:HIS198 4.8 69.2 1.0
O4 A:SO4401 4.9 0.4 1.0

Chlorine binding site 2 out of 2 in 6aqy

Go back to Chlorine Binding Sites List in 6aqy
Chlorine binding site 2 out of 2 in the Crystal Structure of A Gdp-L-Fucose Synthetase From Naegleria Fowleri


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Gdp-L-Fucose Synthetase From Naegleria Fowleri within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl402

b:0.3
occ:1.00
N E:VAL199 3.1 67.7 1.0
CG1 E:VAL199 3.3 83.6 1.0
CA E:HIS198 3.6 69.5 1.0
CB E:HIS198 3.6 69.7 1.0
ND1 E:HIS198 3.7 72.1 1.0
C E:HIS198 3.9 69.6 1.0
CB E:VAL199 3.9 78.3 1.0
CG E:HIS198 4.0 70.9 1.0
CA E:VAL199 4.1 73.2 1.0
CE1 E:HIS198 4.8 71.8 1.0
N E:HIS198 4.9 71.3 1.0

Reference:

T.E.Edwards, D.M.Dranow, D.D.Lorimer, Seattle Structural Genomics Center For Infectious Disease. Crystal Structure of A Gdp-L-Fucose Synthetase From Naegleria Fowleri To Be Published.
Page generated: Fri Jul 26 22:12:59 2024

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