Chlorine in PDB 6avk: Streptavidin Bound to Peptide-Like Compound Kpm-6

Protein crystallography data

The structure of Streptavidin Bound to Peptide-Like Compound Kpm-6, PDB code: 6avk was solved by H.Park, R.Shamim, P.Mcenaney, T.Kodadek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 69.67 / 1.40
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 47.310, 93.520, 104.450, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 18.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Streptavidin Bound to Peptide-Like Compound Kpm-6 (pdb code 6avk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Streptavidin Bound to Peptide-Like Compound Kpm-6, PDB code: 6avk:

Chlorine binding site 1 out of 1 in 6avk

Go back to Chlorine Binding Sites List in 6avk
Chlorine binding site 1 out of 1 in the Streptavidin Bound to Peptide-Like Compound Kpm-6


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Streptavidin Bound to Peptide-Like Compound Kpm-6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:28.0
occ:1.00
CL1 A:BZ4201 0.0 28.0 1.0
C30 A:BZ4201 1.8 24.2 1.0
H301 A:BZ4201 2.2 23.8 1.0
H302 A:BZ4201 2.2 24.2 1.0
C28 A:BZ4201 2.6 21.1 1.0
O A:HIS127 3.2 15.9 1.0
NE1 A:TRP108 3.3 14.3 1.0
O8 A:BZ4201 3.4 19.9 1.0
O A:HOH385 3.5 18.5 1.0
N6 A:BZ4201 3.5 20.8 1.0
O A:HOH373 3.7 36.5 1.0
CD1 A:LEU25 3.7 28.6 1.0
CZ2 A:TRP108 3.8 14.0 1.0
CE2 A:TRP108 3.8 14.4 1.0
O A:HOH434 4.0 41.7 1.0
CG A:ASP128 4.1 20.9 1.0
OD2 A:ASP128 4.2 21.2 1.0
CB A:ASP128 4.2 16.0 1.0
C A:HIS127 4.3 15.4 1.0
CD1 A:TRP108 4.4 13.8 1.0
C29 A:BZ4201 4.4 20.9 1.0
OD1 A:ASP128 4.5 22.6 1.0
C27 A:BZ4201 4.5 19.9 1.0
H72 A:BZ4201 4.6 19.5 1.0
N A:HIS127 4.7 12.9 1.0
CA A:ASP128 4.8 13.7 1.0
O A:HOH308 4.9 18.6 1.0
N A:ASP128 5.0 13.5 1.0

Reference:

P.Mcenaney, P.Dickson, V.Dang, A.Macconnell, V.Cavett, S.Reza, H.Park, B.Paegel, T.Kodadek. Efficient Workflow For Screening Dna-Encoded One Bead One Compound Libraries Using A Flow Cytometer To Be Published.
Page generated: Sat Dec 12 12:44:39 2020

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