Atomistry » Chlorine » PDB 6axv-6b3w » 6axy
Atomistry »
  Chlorine »
    PDB 6axv-6b3w »
      6axy »

Chlorine in PDB 6axy: Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein

Protein crystallography data

The structure of Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein, PDB code: 6axy was solved by A.T.Gres, K.A.Kirby, S.G.Sarafianos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.96 / 2.78
Space group P 6
Cell size a, b, c (Å), α, β, γ (°) 91.915, 91.915, 57.919, 90.00, 90.00, 120.00
R / Rfree (%) 21.3 / 26

Other elements in 6axy:

The structure of Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein also contains other interesting chemical elements:

Iodine (I) 7 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein (pdb code 6axy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 9 binding sites of Chlorine where determined in the Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein, PDB code: 6axy:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Chlorine binding site 1 out of 9 in 6axy

Go back to Chlorine Binding Sites List in 6axy
Chlorine binding site 1 out of 9 in the Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl308

b:80.9
occ:1.00
 CD A:PRO17 3.7 91.0 1.0
CG A:ARG18 3.7 93.8 1.0
CB A:SER16 3.8 85.5 1.0
N A:ARG18 3.8 90.0 1.0
CD A:ARG18 3.9 97.5 1.0
OG A:SER16 4.0 86.4 1.0
CG A:PRO17 4.0 93.9 1.0
N A:PRO17 4.0 88.7 1.0
CB A:ARG18 4.1 93.5 1.0
CB A:PRO17 4.1 93.6 1.0
C A:SER16 4.5 88.2 1.0
CA A:PRO17 4.6 90.3 1.0
CA A:SER16 4.6 86.9 1.0
CA A:ARG18 4.6 90.2 1.0
C A:PRO17 4.7 89.4 1.0

Chlorine binding site 2 out of 9 in 6axy

Go back to Chlorine Binding Sites List in 6axy
Chlorine binding site 2 out of 9 in the Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl309

b:61.0
occ:1.00
 O A:HOH404 3.0 38.0 1.0
CG A:PRO38 3.5 81.7 1.0
NH2 A:ARG173 3.8 64.0 1.0
CD A:PRO38 4.2 78.7 1.0
CB A:PRO38 4.7 81.4 1.0
NE A:ARG173 4.7 61.4 1.0
CZ A:ARG173 4.8 62.6 1.0
I A:IOD304 4.8 83.3 0.6

Chlorine binding site 3 out of 9 in 6axy

Go back to Chlorine Binding Sites List in 6axy
Chlorine binding site 3 out of 9 in the Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl310

b:57.4
occ:1.00
 O A:GLY60 2.9 59.5 1.0
CD2 A:HIS62 3.4 64.8 1.0
NE2 A:HIS62 3.7 66.8 1.0
CG A:GLU28 4.1 92.8 1.0
C A:GLY60 4.1 58.2 1.0
CG1 A:VAL59 4.2 53.9 1.0
CA A:GLU28 4.2 88.9 1.0
O A:VAL27 4.2 82.5 1.0
CG1 A:VAL27 4.2 80.5 1.0
N A:GLU28 4.3 85.5 1.0
C A:VAL27 4.4 82.7 1.0
CA A:GLY61 4.6 59.7 1.0
CG A:HIS62 4.6 63.8 1.0
C A:GLY61 4.7 59.6 1.0
CB A:GLU28 4.7 91.5 1.0
O A:GLY61 4.8 59.0 1.0
N A:GLY60 4.9 56.5 1.0
N A:GLY61 4.9 58.7 1.0
CB A:VAL27 4.9 79.8 1.0
CE1 A:HIS62 5.0 67.3 1.0

Chlorine binding site 4 out of 9 in 6axy

Go back to Chlorine Binding Sites List in 6axy
Chlorine binding site 4 out of 9 in the Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl311

b:72.6
occ:1.00
 N A:PHE32 3.3 79.5 1.0
CB A:ALA31 3.5 84.7 1.0
CB A:PHE32 3.8 77.7 1.0
CD2 A:TYR145 3.8 80.8 1.0
CA A:PHE32 3.9 77.7 1.0
CB A:TYR145 3.9 76.5 1.0
C A:PHE32 4.2 77.7 1.0
CD2 A:PHE32 4.2 78.3 1.0
O A:PHE32 4.2 78.3 1.0
C A:ALA31 4.3 81.2 1.0
CG A:TYR145 4.4 79.1 1.0
CG A:PHE32 4.5 77.7 1.0
CA A:ALA31 4.5 83.7 1.0
O A:TYR145 4.6 75.8 1.0
CE2 A:TYR145 4.9 83.0 1.0
N A:SER33 4.9 77.2 1.0

Chlorine binding site 5 out of 9 in 6axy

Go back to Chlorine Binding Sites List in 6axy
Chlorine binding site 5 out of 9 in the Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl312

b:89.2
occ:1.00
 CZ3 A:TRP80 3.9 69.9 1.0
CD1 A:ILE129 4.0 71.5 1.0
CG1 A:ILE129 4.0 71.8 1.0
CH2 A:TRP80 4.1 70.5 1.0
NH1 A:ARG132 4.4 87.8 1.0
NH2 A:ARG132 4.5 89.0 1.0
CZ A:ARG132 4.9 86.7 1.0

Chlorine binding site 6 out of 9 in 6axy

Go back to Chlorine Binding Sites List in 6axy
Chlorine binding site 6 out of 9 in the Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl313

b:69.3
occ:1.00
 ND2 A:ASN21 3.0 91.2 1.0
CA A:ASN21 3.4 82.9 1.0
CB A:ASN21 3.4 86.1 1.0
CG A:ASN21 3.7 89.1 1.0
N A:ASN21 3.8 80.8 1.0
O A:PRO17 4.2 88.8 1.0
C A:LEU20 4.6 78.8 1.0
CG A:LEU20 4.7 80.2 1.0
C A:ASN21 4.8 81.8 1.0
CD2 A:LEU20 4.8 82.5 1.0
OD1 A:ASN21 4.9 90.1 1.0
CB A:LEU20 5.0 79.6 1.0

Chlorine binding site 7 out of 9 in 6axy

Go back to Chlorine Binding Sites List in 6axy
Chlorine binding site 7 out of 9 in the Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl314

b:82.2
occ:0.90
 N A:GLN63 3.3 58.3 1.0
N A:HIS62 3.3 60.7 1.0
CA A:GLY61 3.4 59.7 1.0
C A:GLY61 3.5 59.6 1.0
CG A:GLN63 3.6 57.7 1.0
CB A:GLN63 3.7 57.7 1.0
CA A:GLN63 4.1 57.2 1.0
CA A:HIS62 4.1 60.9 1.0
N A:GLY61 4.2 58.7 1.0
C A:HIS62 4.2 59.2 1.0
O A:GLY61 4.4 59.0 1.0
CD A:GLN63 4.9 56.9 1.0

Chlorine binding site 8 out of 9 in 6axy

Go back to Chlorine Binding Sites List in 6axy
Chlorine binding site 8 out of 9 in the Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl315

b:77.3
occ:1.00
 N A:ARG97 3.1 83.0 1.0
CD A:ARG97 3.6 82.8 1.0
CG A:ARG97 3.8 81.9 1.0
CA A:MET96 3.8 84.0 1.0
CB A:ARG97 3.8 83.2 1.0
C A:MET96 3.9 83.6 1.0
CA A:ARG97 4.1 83.4 1.0
OE2 A:GLU113 4.2 81.3 1.0
NE A:ARG97 4.3 81.7 1.0
SD A:MET96 4.3 86.5 1.0
O A:GLN95 4.3 85.6 1.0
CB A:MET96 4.5 83.9 1.0
CE A:MET96 4.6 84.3 1.0
CG2 A:ILE91 4.7 85.2 1.0
N A:MET96 4.9 84.9 1.0
CG1 A:ILE91 4.9 85.0 1.0
O A:MET96 5.0 83.7 1.0

Chlorine binding site 9 out of 9 in 6axy

Go back to Chlorine Binding Sites List in 6axy
Chlorine binding site 9 out of 9 in the Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Structure of the V11I/T58A/I124A Mutant of the Hiv-1 Capsid Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl316

b:78.9
occ:1.00
 NE A:ARG167 3.2 67.3 1.0
CD1 A:ILE153 3.4 66.9 1.0
O A:HOH424 3.5 41.8 1.0
NH2 A:ARG167 3.8 70.1 1.0
CG A:ARG167 3.9 64.6 1.0
CB A:ARG167 3.9 62.7 1.0
CZ A:ARG167 4.0 68.7 1.0
CD A:ARG167 4.1 66.0 1.0
CG2 A:THR148 4.5 75.7 1.0
OG1 A:THR171 4.6 60.5 1.0
CA A:ARG167 4.8 61.1 1.0
CG1 A:ILE153 4.9 65.7 1.0

Reference:

M.Novikova, A.T.Gres, K.A.Kirby, S.G.Sarafianos, E.O.Freed. Identification of A Novel Element in Hiv-1 Capsid Critical For Assembly and Maturation To Be Published.
Page generated: Fri Jul 26 22:22:46 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy