Chlorine in PDB 6b09: Crystal Structure of HSNUDT16 in Complex with Diadpr (Soaked)

Enzymatic activity of Crystal Structure of HSNUDT16 in Complex with Diadpr (Soaked)

All present enzymatic activity of Crystal Structure of HSNUDT16 in Complex with Diadpr (Soaked):
3.6.1.62; 3.6.1.64;

Protein crystallography data

The structure of Crystal Structure of HSNUDT16 in Complex with Diadpr (Soaked), PDB code: 6b09 was solved by P.Thirawatananond, S.B.Gabelli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.62 / 3.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.395, 47.063, 75.792, 90.00, 108.74, 90.00
R / Rfree (%) 25.6 / 27.9

Other elements in 6b09:

The structure of Crystal Structure of HSNUDT16 in Complex with Diadpr (Soaked) also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of HSNUDT16 in Complex with Diadpr (Soaked) (pdb code 6b09). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of HSNUDT16 in Complex with Diadpr (Soaked), PDB code: 6b09:

Chlorine binding site 1 out of 1 in 6b09

Go back to Chlorine Binding Sites List in 6b09
Chlorine binding site 1 out of 1 in the Crystal Structure of HSNUDT16 in Complex with Diadpr (Soaked)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of HSNUDT16 in Complex with Diadpr (Soaked) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:47.9
occ:1.00
NZ A:LYS131 4.9 41.7 1.0

Reference:

P.Thirawatananond, R.L.Mcpherson, J.Malhi, S.Nathan, M.J.Lambrecht, M.Brichacek, P.J.Hergenrother, A.K.L.Leung, S.B.Gabelli. Structural Analyses of NUDT16-Adp-Ribose Complexes Direct Rational Design of Mutants with Improved Processing of Poly(Adp-Ribosyl)Ated Proteins. Sci Rep V. 9 5940 2019.
ISSN: ESSN 2045-2322
PubMed: 30976021
DOI: 10.1038/S41598-019-39491-W
Page generated: Sat Dec 12 12:44:57 2020

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