Atomistry » Chlorine » PDB 6b4n-6bb2 » 6b6x
Atomistry »
  Chlorine »
    PDB 6b4n-6bb2 »
      6b6x »

Chlorine in PDB 6b6x: Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced (Protein Batch 2), Canonical C- Cluster

Enzymatic activity of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced (Protein Batch 2), Canonical C- Cluster

All present enzymatic activity of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced (Protein Batch 2), Canonical C- Cluster:
1.2.7.4;

Protein crystallography data

The structure of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced (Protein Batch 2), Canonical C- Cluster, PDB code: 6b6x was solved by E.C.Wittenborn, C.L.Drennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.87 / 1.84
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 64.650, 154.870, 66.490, 90.00, 102.67, 90.00
R / Rfree (%) 14.4 / 17.1

Other elements in 6b6x:

The structure of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced (Protein Batch 2), Canonical C- Cluster also contains other interesting chemical elements:

Nickel (Ni) 2 atoms
Magnesium (Mg) 4 atoms
Iron (Fe) 18 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced (Protein Batch 2), Canonical C- Cluster (pdb code 6b6x). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced (Protein Batch 2), Canonical C- Cluster, PDB code: 6b6x:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6b6x

Go back to Chlorine Binding Sites List in 6b6x
Chlorine binding site 1 out of 3 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced (Protein Batch 2), Canonical C- Cluster


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced (Protein Batch 2), Canonical C- Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl706

b:31.9
occ:1.00
 N A:LYS65 3.2 42.7 1.0
CB A:ARG64 3.7 31.9 1.0
CA A:ARG64 3.8 30.1 1.0
O A:HOH934 3.9 33.6 1.0
N A:ASP66 3.9 36.0 1.0
C A:ARG64 3.9 41.3 1.0
CB A:LYS65 4.0 53.1 1.0
CG A:LYS65 4.0 61.6 1.0
CA A:LYS65 4.0 41.6 1.0
CG A:ARG64 4.1 30.6 1.0
OD1 A:ASP66 4.2 30.0 1.0
CG A:ASP66 4.4 38.1 1.0
C A:LYS65 4.5 39.2 1.0
NE A:ARG64 4.5 25.8 1.0
OD2 A:ASP66 4.8 34.8 1.0
CB A:ASP66 4.8 34.4 1.0
CD A:ARG64 4.9 31.0 1.0

Chlorine binding site 2 out of 3 in 6b6x

Go back to Chlorine Binding Sites List in 6b6x
Chlorine binding site 2 out of 3 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced (Protein Batch 2), Canonical C- Cluster


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced (Protein Batch 2), Canonical C- Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl711

b:43.8
occ:1.00
 O B:HOH1154 2.8 46.1 1.0
N B:ASN164 3.1 18.0 1.0
NH1 B:ARG163 3.5 39.9 1.0
N B:ALA165 3.6 18.1 1.0
NE B:ARG163 3.7 34.8 1.0
O B:ALA165 3.8 18.8 1.0
CZ B:ARG163 3.8 40.0 1.0
CA B:ASN164 3.9 20.0 1.0
CA B:ARG163 3.9 17.2 1.0
CB B:ASN164 3.9 27.0 1.0
C B:ARG163 4.0 21.8 1.0
CB B:ARG163 4.0 16.1 1.0
C B:ASN164 4.2 19.3 1.0
O B:HOH881 4.3 27.4 1.0
O B:HOH1172 4.4 43.6 1.0
CA B:ALA165 4.6 16.2 1.0
ND2 B:ASN164 4.6 37.3 1.0
C B:ALA165 4.6 17.3 1.0
CG B:ASN164 4.6 34.1 1.0
CD B:ARG163 4.7 29.1 1.0
NH2 B:ARG163 4.8 38.4 1.0
CG B:ARG163 4.9 24.9 1.0
CB B:ALA165 5.0 20.5 1.0

Chlorine binding site 3 out of 3 in 6b6x

Go back to Chlorine Binding Sites List in 6b6x
Chlorine binding site 3 out of 3 in the Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced (Protein Batch 2), Canonical C- Cluster


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Desulfovibrio Vulgaris Carbon Monoxide Dehydrogenase, Dithionite-Reduced (Protein Batch 2), Canonical C- Cluster within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl712

b:40.8
occ:1.00
 NE B:ARG621 3.0 35.4 1.0
NH1 B:ARG621 3.1 21.8 1.0
NE2 B:GLN594 3.2 41.4 1.0
O B:HOH811 3.3 26.8 1.0
CZ B:ARG621 3.5 26.4 1.0
ND1 B:HIS617 3.7 39.9 1.0
O B:GLY598 3.8 24.9 1.0
CG B:PRO570 3.8 24.2 1.0
OE1 B:GLN594 3.8 46.2 1.0
O B:HOH932 3.8 35.1 1.0
CD B:GLN594 3.9 36.8 1.0
CD B:ARG621 4.2 36.2 1.0
CE1 B:HIS617 4.3 36.2 1.0
CG B:HIS617 4.4 37.8 1.0
CB B:HIS617 4.6 28.6 1.0
CB B:PRO570 4.7 20.8 1.0
C B:GLY598 4.8 22.1 1.0
CD B:PRO570 4.8 23.0 1.0
CA B:ALA599 4.8 26.1 1.0
NH2 B:ARG621 4.8 23.4 1.0
CG B:ARG621 4.9 28.9 1.0

Reference:

E.C.Wittenborn, M.Merrouch, C.Ueda, L.Fradale, C.Leger, V.Fourmond, M.E.Pandelia, S.Dementin, C.L.Drennan. Redox-Dependent Rearrangements of the Nifes Cluster of Carbon Monoxide Dehydrogenase. Elife V. 7 2018.
ISSN: ESSN 2050-084X
PubMed: 30277213
DOI: 10.7554/ELIFE.39451
Page generated: Fri Jul 26 22:33:32 2024

Last articles

Ca in 2QT7
Ca in 2QU1
Ca in 2QTW
Ca in 2QKK
Ca in 2QRB
Ca in 2QQT
Ca in 2QQP
Ca in 2QQO
Ca in 2QPS
Ca in 2QQM
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy