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Chlorine in PDB 6b7u: Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment

Enzymatic activity of Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment

All present enzymatic activity of Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment:
3.2.1.17;

Protein crystallography data

The structure of Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment, PDB code: 6b7u was solved by M.A.B.Morais, A.F.Z.Nascimento, C.Y.Tominaga, M.Cristianini, A.A.L.Tribst, M.T.Murakami, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.40 / 1.58
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.079, 78.079, 36.945, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 21.1

Other elements in 6b7u:

The structure of Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment (pdb code 6b7u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment, PDB code: 6b7u:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 6b7u

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Chlorine binding site 1 out of 6 in the Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:19.2
occ:1.00
 ND2 A:ASN131 3.2 17.5 1.0
CB A:ASN131 3.5 15.0 1.0
CG A:ASN131 3.8 15.5 1.0
CA A:ALA128 3.9 17.6 1.0
O A:VAL127 4.2 18.5 1.0
N A:ALA128 4.3 15.7 1.0
CB A:ALA128 4.3 17.6 1.0
C A:VAL127 4.4 17.1 1.0
CD A:ARG132 4.5 20.5 1.0
CG1 A:VAL127 4.5 33.1 1.0
CG A:ARG132 4.6 20.3 1.0
CG2 A:VAL127 4.7 28.9 1.0
CA A:ASN131 4.8 12.8 1.0
C A:ALA128 5.0 16.8 1.0

Chlorine binding site 2 out of 6 in 6b7u

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Chlorine binding site 2 out of 6 in the Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:22.8
occ:1.00
 OG A:SER42 3.1 16.8 1.0
N A:GLY44 3.1 14.8 1.0
CA A:GLY44 3.5 13.0 1.0
CB A:SER42 3.5 16.2 1.0
CA A:GLN139 3.6 20.0 1.0
O A:HOH386 3.6 36.1 1.0
N A:GLN139 3.9 15.6 1.0
CB A:GLN139 4.0 19.5 1.0
CD1 A:ILE142 4.1 31.1 1.0
CG A:GLN139 4.2 31.8 1.0
N A:LEU43 4.2 14.3 1.0
C A:VAL138 4.3 18.1 1.0
O A:VAL138 4.3 17.3 1.0
CG2 A:VAL138 4.3 20.3 1.0
C A:SER42 4.3 16.6 1.0
C A:LEU43 4.3 13.6 1.0
CG1 A:ILE142 4.4 25.4 1.0
C A:GLY44 4.5 12.5 1.0
CA A:SER42 4.5 15.4 1.0
N A:ASN45 4.6 13.0 1.0
CA A:LEU43 4.7 16.2 1.0
CD A:GLN139 4.7 40.2 1.0
NE2 A:GLN139 4.7 45.2 1.0
O A:SER42 4.8 17.2 1.0
C A:GLN139 4.8 18.1 1.0

Chlorine binding site 3 out of 6 in 6b7u

Go back to Chlorine Binding Sites List in 6b7u
Chlorine binding site 3 out of 6 in the Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:38.1
occ:1.00
 NZ A:LYS51 3.4 23.4 1.0
O A:HOH392 3.6 37.3 1.0
CE2 A:PHE56 3.7 17.2 1.0
CE A:LYS51 3.8 24.4 1.0
CZ3 A:TRP141 3.8 18.4 1.0
O A:HOH352 3.9 37.5 1.0
CD A:LYS51 4.1 19.0 1.0
CZ A:PHE56 4.4 15.0 1.0
CD A:ARG23 4.5 27.3 1.0
CB A:ARG23 4.5 19.1 1.0
CH2 A:TRP141 4.6 21.6 1.0
CD2 A:PHE56 4.6 17.6 1.0
C1 A:GOL209 4.7 40.3 1.0
CE3 A:TRP141 4.8 17.4 1.0
CG A:ARG23 4.9 19.6 1.0

Chlorine binding site 4 out of 6 in 6b7u

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Chlorine binding site 4 out of 6 in the Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:29.8
occ:1.00
 N A:THR87 3.1 17.3 1.0
O A:HOH367 3.1 18.1 1.0
O A:THR87 3.2 20.2 1.0
N A:ARG86 3.4 15.2 1.0
C A:GLY85 3.5 17.7 1.0
N A:GLY85 3.6 16.6 1.0
CA A:GLY85 3.6 15.9 1.0
OD1 A:ASN83 3.6 18.2 1.0
C A:THR87 3.7 19.3 1.0
OG A:SER90 3.7 23.4 1.0
CA A:THR87 3.8 17.1 1.0
O A:HOH304 3.8 23.8 1.0
C A:ARG86 4.1 15.9 1.0
CB A:THR87 4.1 19.0 1.0
CA A:ARG86 4.1 13.3 1.0
OD1 A:ASP84 4.2 13.0 1.0
O A:GLY85 4.2 21.5 1.0
NA A:NA207 4.5 21.5 1.0
OG1 A:THR87 4.7 16.2 1.0
N A:PRO88 4.7 23.6 1.0
C A:ASP84 4.7 14.7 1.0
N A:ASP84 4.7 12.2 1.0
CG A:ASN83 4.8 18.1 1.0
OXT A:ACT211 4.9 39.8 1.0
CB A:SER90 5.0 25.8 1.0

Chlorine binding site 5 out of 6 in 6b7u

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Chlorine binding site 5 out of 6 in the Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:37.9
occ:1.00
 N A:ILE106 3.2 16.6 1.0
CG1 A:ILE106 3.6 15.8 1.0
O A:HOH330 3.7 34.8 1.0
CA A:ASP105 3.8 19.4 1.0
O A:SER104 3.8 22.5 1.0
CE1 A:HIS33 3.9 23.0 1.0
C A:ASP105 4.0 18.1 1.0
NH2 A:ARG32 4.0 37.0 1.0
OD1 A:ASP105 4.1 25.4 1.0
CB A:ILE106 4.2 15.3 1.0
CA A:ILE106 4.2 17.5 1.0
CG2 A:ILE106 4.2 18.6 1.0
CZ A:PHE21 4.3 21.4 1.0
CB A:ALA29 4.4 18.5 1.0
CD1 A:ILE106 4.6 18.7 1.0
ND1 A:HIS33 4.7 27.7 1.0
CG A:ASP105 4.7 26.6 1.0
C A:SER104 4.7 16.9 1.0
NE2 A:HIS33 4.7 28.3 1.0
N A:ASP105 4.7 19.7 1.0
CB A:ASP105 4.8 20.5 1.0
CE2 A:PHE21 4.9 17.6 1.0
N A:THR107 4.9 17.2 1.0
C A:ILE106 4.9 17.7 1.0

Chlorine binding site 6 out of 6 in 6b7u

Go back to Chlorine Binding Sites List in 6b7u
Chlorine binding site 6 out of 6 in the Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of Hen Egg-White Lysozyme Without High-Pressure Pre- Treatment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:34.8
occ:1.00
 O A:HOH393 3.0 26.5 1.0
ND2 A:ASN83 3.1 26.5 1.0
CB A:PRO97 3.8 14.4 1.0
CA A:PRO97 3.8 17.5 1.0
CB A:ASN83 3.9 18.2 1.0
CG A:ASN83 3.9 18.1 1.0
N A:PRO97 3.9 17.3 1.0
O A:ASN83 4.3 16.1 1.0
CD A:PRO97 4.4 15.3 1.0
CG A:PRO97 4.5 17.8 1.0
C A:ILE96 4.6 16.5 1.0
O A:ILE96 4.8 17.9 1.0
ND2 A:ASN92 4.9 18.5 1.0
O A:HOH390 4.9 18.9 1.0
C A:ASN83 4.9 13.5 1.0
CA A:ASN83 5.0 14.8 1.0

Reference:

M.A.B.Morais, A.F.Z.Nascimento, C.Y.Tominaga, M.Cristianini, A.A.L.Tribst, M.T.Murakami. How High Pressure Pre-Treatments Affect the Function and Structure of Hen Egg-White Lysozyme Innov Food Sci Emerg Technol V. 47 195 2018.
DOI: 10.1016/J.IFSET.2018.02.008
Page generated: Fri Jul 26 22:35:14 2024

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