Chlorine in PDB 6b9b: Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei with Maltose Bound

Enzymatic activity of Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei with Maltose Bound

All present enzymatic activity of Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei with Maltose Bound:
1.11.1.21;

Protein crystallography data

The structure of Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei with Maltose Bound, PDB code: 6b9b was solved by P.C.Loewen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 100.419, 115.088, 174.975, 90.00, 90.00, 90.00
R / Rfree (%) 13.5 / 16.2

Other elements in 6b9b:

The structure of Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei with Maltose Bound also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei with Maltose Bound (pdb code 6b9b). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei with Maltose Bound, PDB code: 6b9b:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6b9b

Go back to Chlorine Binding Sites List in 6b9b
Chlorine binding site 1 out of 2 in the Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei with Maltose Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei with Maltose Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl803

b:36.2
occ:1.00
O A:HOH1450 3.0 20.3 1.0
O A:HOH1563 3.0 19.2 1.0
O A:HOH1488 3.1 21.1 1.0
N A:GLY124 3.4 17.0 1.0
CB A:GLU198 3.4 34.9 1.0
CG A:GLU198 3.4 41.5 1.0
CG2 A:VAL200 3.4 26.2 1.0
O A:HOH1452 3.8 35.5 1.0
CA A:GLY124 4.0 18.4 1.0
CB A:ARG123 4.3 18.9 1.0
O A:HOH1145 4.4 43.5 1.0
C A:ARG123 4.4 17.5 1.0
CA A:ARG123 4.4 18.5 1.0
OE1 A:GLU128 4.5 28.7 1.0
CD A:GLU198 4.5 48.5 1.0
NA A:NA802 4.6 19.3 1.0
O A:GLY124 4.7 17.2 1.0
C A:GLY124 4.7 18.3 1.0
CG A:ARG123 4.8 18.6 1.0
O A:HOH1150 4.8 20.8 1.0
CG A:GLN130 4.8 17.9 1.0
CB A:VAL200 4.9 24.4 1.0
CD A:GLU128 4.9 29.0 1.0
CA A:GLU198 4.9 27.6 1.0
OE2 A:GLU128 5.0 31.2 1.0
O A:HOH1044 5.0 16.1 1.0

Chlorine binding site 2 out of 2 in 6b9b

Go back to Chlorine Binding Sites List in 6b9b
Chlorine binding site 2 out of 2 in the Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei with Maltose Bound


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Catalase-Peroxidase From B. Pseudomallei with Maltose Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl803

b:38.2
occ:1.00
O B:HOH1594 3.0 17.0 1.0
O B:HOH1474 3.1 24.2 1.0
O B:HOH1518 3.1 20.1 1.0
N B:GLY124 3.3 18.9 1.0
CB B:GLU198 3.4 33.5 1.0
CG2 B:VAL200 3.4 22.5 1.0
CG B:GLU198 3.4 44.4 1.0
O B:HOH1505 3.7 35.3 1.0
CA B:GLY124 4.0 17.0 1.0
C B:ARG123 4.3 16.4 1.0
CB B:ARG123 4.3 16.2 1.0
OE1 B:GLU128 4.4 30.2 1.0
CA B:ARG123 4.4 17.2 1.0
O B:HOH1365 4.4 41.2 1.0
CD B:GLU198 4.5 49.5 1.0
NA B:NA802 4.7 19.6 1.0
CG B:GLN130 4.8 18.3 1.0
O B:GLY124 4.8 17.2 1.0
C B:GLY124 4.8 18.0 1.0
O B:HOH1251 4.8 19.2 1.0
CD B:GLU128 4.8 27.6 1.0
OE2 B:GLU128 4.8 31.4 1.0
CG B:ARG123 4.8 17.8 1.0
CB B:VAL200 4.9 22.1 1.0
CA B:GLU198 4.9 25.1 1.0

Reference:

P.C.Loewen, P.M.De Silva, L.J.Donald, J.Switala, J.Villanueva, I.Fita, A.Kumar. Katg-Mediated Oxidation Leading to Reduced Susceptibility of Bacteria to Kanamycin. Acs Omega V. 3 4213 2018.
ISSN: ESSN 2470-1343
PubMed: 29732452
DOI: 10.1021/ACSOMEGA.8B00356
Page generated: Sat Dec 12 12:45:46 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy