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Chlorine in PDB 6baa: Cryo-Em Structure of the Pancreatic Beta-Cell Katp Channel Bound to Atp and Glibenclamide

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cryo-Em Structure of the Pancreatic Beta-Cell Katp Channel Bound to Atp and Glibenclamide (pdb code 6baa). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Cryo-Em Structure of the Pancreatic Beta-Cell Katp Channel Bound to Atp and Glibenclamide, PDB code: 6baa:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 6baa

Go back to Chlorine Binding Sites List in 6baa
Chlorine binding site 1 out of 4 in the Cryo-Em Structure of the Pancreatic Beta-Cell Katp Channel Bound to Atp and Glibenclamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of the Pancreatic Beta-Cell Katp Channel Bound to Atp and Glibenclamide within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl2001

b:0.0
occ:1.00
CL1 E:GBM2001 0.0 0.0 1.0
C31 E:GBM2001 1.8 0.0 1.0
C29 E:GBM2001 2.7 0.0 1.0
C32 E:GBM2001 2.8 0.0 1.0
ND2 E:ASN437 2.9 0.1 1.0
NH1 E:ARG306 2.9 0.5 1.0
OD1 E:ASN437 3.3 0.1 1.0
CG E:ASN437 3.5 0.1 1.0
CE E:MET441 3.7 0.5 1.0
CZ E:ARG306 4.0 0.5 1.0
C27 E:GBM2001 4.0 0.0 1.0
C30 E:GBM2001 4.0 0.0 1.0
OH E:TYR377 4.4 0.8 1.0
C28 E:GBM2001 4.5 0.0 1.0
NH2 E:ARG306 4.7 0.5 1.0
SD E:MET441 4.8 0.5 1.0
NE E:ARG306 4.9 0.5 1.0
CG E:LEU592 4.9 0.0 1.0
CB E:ASN437 4.9 0.1 1.0
CD E:ARG306 4.9 0.5 1.0

Chlorine binding site 2 out of 4 in 6baa

Go back to Chlorine Binding Sites List in 6baa
Chlorine binding site 2 out of 4 in the Cryo-Em Structure of the Pancreatic Beta-Cell Katp Channel Bound to Atp and Glibenclamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cryo-Em Structure of the Pancreatic Beta-Cell Katp Channel Bound to Atp and Glibenclamide within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl2001

b:0.0
occ:1.00
CL1 F:GBM2001 0.0 0.0 1.0
C31 F:GBM2001 1.8 0.0 1.0
C29 F:GBM2001 2.7 0.0 1.0
C32 F:GBM2001 2.8 0.0 1.0
ND2 F:ASN437 2.9 0.1 1.0
NH1 F:ARG306 2.9 0.5 1.0
OD1 F:ASN437 3.3 0.1 1.0
CG F:ASN437 3.5 0.1 1.0
CE F:MET441 3.7 0.5 1.0
CZ F:ARG306 4.0 0.5 1.0
C27 F:GBM2001 4.0 0.0 1.0
C30 F:GBM2001 4.0 0.0 1.0
OH F:TYR377 4.4 0.8 1.0
C28 F:GBM2001 4.5 0.0 1.0
NH2 F:ARG306 4.7 0.5 1.0
SD F:MET441 4.8 0.5 1.0
NE F:ARG306 4.9 0.5 1.0
CG F:LEU592 4.9 0.0 1.0
CB F:ASN437 4.9 0.1 1.0
CD F:ARG306 4.9 0.5 1.0

Chlorine binding site 3 out of 4 in 6baa

Go back to Chlorine Binding Sites List in 6baa
Chlorine binding site 3 out of 4 in the Cryo-Em Structure of the Pancreatic Beta-Cell Katp Channel Bound to Atp and Glibenclamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cryo-Em Structure of the Pancreatic Beta-Cell Katp Channel Bound to Atp and Glibenclamide within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl2001

b:0.0
occ:1.00
CL1 G:GBM2001 0.0 0.0 1.0
C31 G:GBM2001 1.8 0.0 1.0
C29 G:GBM2001 2.7 0.0 1.0
C32 G:GBM2001 2.8 0.0 1.0
ND2 G:ASN437 2.9 0.1 1.0
NH1 G:ARG306 2.9 0.5 1.0
OD1 G:ASN437 3.3 0.1 1.0
CG G:ASN437 3.5 0.1 1.0
CE G:MET441 3.7 0.5 1.0
CZ G:ARG306 4.0 0.5 1.0
C27 G:GBM2001 4.0 0.0 1.0
C30 G:GBM2001 4.0 0.0 1.0
OH G:TYR377 4.4 0.8 1.0
C28 G:GBM2001 4.5 0.0 1.0
NH2 G:ARG306 4.7 0.5 1.0
SD G:MET441 4.8 0.5 1.0
NE G:ARG306 4.9 0.5 1.0
CG G:LEU592 4.9 0.0 1.0
CB G:ASN437 4.9 0.1 1.0
CD G:ARG306 4.9 0.5 1.0

Chlorine binding site 4 out of 4 in 6baa

Go back to Chlorine Binding Sites List in 6baa
Chlorine binding site 4 out of 4 in the Cryo-Em Structure of the Pancreatic Beta-Cell Katp Channel Bound to Atp and Glibenclamide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Cryo-Em Structure of the Pancreatic Beta-Cell Katp Channel Bound to Atp and Glibenclamide within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl2001

b:0.0
occ:1.00
CL1 H:GBM2001 0.0 0.0 1.0
C31 H:GBM2001 1.8 0.0 1.0
C29 H:GBM2001 2.7 0.0 1.0
C32 H:GBM2001 2.8 0.0 1.0
ND2 H:ASN437 2.9 0.1 1.0
NH1 H:ARG306 2.9 0.5 1.0
OD1 H:ASN437 3.3 0.1 1.0
CG H:ASN437 3.5 0.1 1.0
CE H:MET441 3.7 0.5 1.0
CZ H:ARG306 4.0 0.5 1.0
C27 H:GBM2001 4.0 0.0 1.0
C30 H:GBM2001 4.0 0.0 1.0
OH H:TYR377 4.4 0.8 1.0
C28 H:GBM2001 4.5 0.0 1.0
NH2 H:ARG306 4.7 0.5 1.0
SD H:MET441 4.8 0.5 1.0
NE H:ARG306 4.9 0.5 1.0
CG H:LEU592 4.9 0.0 1.0
CB H:ASN437 4.9 0.1 1.0
CD H:ARG306 4.9 0.5 1.0

Reference:

G.M.Martin, B.Kandasamy, F.Dimaio, C.Yoshioka, S.L.Shyng. Anti-Diabetic Drug Binding Site in A Mammalian Katpchannel Revealed By Cryo-Em. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 29035201
DOI: 10.7554/ELIFE.31054
Page generated: Fri Jul 26 22:39:47 2024

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