Chlorine in PDB 6bcs: LILRB2 D1D2 Domains Complexed with Benzamidine

The structure of LILRB2 D1D2 Domains Complexed with Benzamidine, PDB code: 6bcs was solved by Q.Cao, M.R.Sawaya, D.S.Eisenberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.70 / 2.10
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	57.050, 57.050, 101.180, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 23.3

The binding sites of Chlorine atom in the LILRB2 D1D2 Domains Complexed with Benzamidine (pdb code 6bcs). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the LILRB2 D1D2 Domains Complexed with Benzamidine, PDB code: 6bcs:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the LILRB2 D1D2 Domains Complexed with Benzamidine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of LILRB2 D1D2 Domains Complexed with Benzamidine within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl205 b:26.6 occ:1.00 NE2 A:GLN18 3.0 26.0 1.0 N A:TRP67 3.2 24.9 1.0 CD1 A:TRP67 3.5 33.7 1.0 CE A:MET95 3.6 24.2 1.0 CA A:THR66 3.6 23.5 1.0 SD A:MET95 3.7 27.2 1.0 CB A:THR66 3.8 26.6 1.0 C A:THR66 3.9 28.1 1.0 CD A:GLN18 3.9 33.6 1.0 C2 A:DMS207 3.9 29.6 0.4 CG A:GLN18 3.9 27.7 1.0 CB A:TRP67 4.0 29.6 1.0 CG A:TRP67 4.2 30.4 1.0 CA A:TRP67 4.2 25.4 1.0 CG2 A:THR66 4.6 23.9 1.0 NE1 A:TRP67 4.7 30.4 1.0 OG1 A:THR66 4.9 27.0 1.0 O A:ILE65 4.9 24.1 1.0 N A:THR66 5.0 22.4 1.0

Chlorine binding site 2 out of 2 in the LILRB2 D1D2 Domains Complexed with Benzamidine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of LILRB2 D1D2 Domains Complexed with Benzamidine within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl206 b:64.4 occ:1.00 O A:HOH330 3.2 35.3 1.0 N A:ILE158 3.4 30.5 1.0 CA A:ALA157 3.8 26.8 1.0 O A:ILE158 4.0 38.5 1.0 C A:ALA157 4.1 35.5 1.0 NE2 A:HIS150 4.2 51.9 1.0 CB A:ALA157 4.2 25.3 1.0 CA A:ILE158 4.3 28.9 1.0 CB A:ILE158 4.3 36.2 1.0 O A:ARG156 4.6 37.5 1.0 C A:ILE158 4.6 30.7 1.0 CG1 A:ILE158 4.7 36.7 1.0 CB A:SER147 4.9 24.2 1.0 CE1 A:HIS150 4.9 52.1 1.0 N A:ALA157 5.0 27.1 1.0

Q.Cao, W.S.Shin, H.Chan, C.K.Vuong, B.Dubois, B.Li, K.A.Murray, M.R.Sawaya, J.Feigon, D.L.Black, D.S.Eisenberg, L.Jiang. Inhibiting Amyloid-Beta Cytotoxicity Through Its Interaction with the Cell Surface Receptor LILRB2 By Structure-Based Design. Nat Chem V. 10 1213 2018.
ISSN: ESSN 1755-4349
PubMed: 30297750
DOI: 10.1038/S41557-018-0147-Z