Chlorine in PDB 6bie: Misreading Chaperone-Substrate Complexes From Random Noise

Protein crystallography data

The structure of Misreading Chaperone-Substrate Complexes From Random Noise, PDB code: 6bie was solved by J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.54 / 1.77
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 42.960, 42.960, 258.169, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 24.8

Other elements in 6bie:

The structure of Misreading Chaperone-Substrate Complexes From Random Noise also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 14 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Misreading Chaperone-Substrate Complexes From Random Noise (pdb code 6bie). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Misreading Chaperone-Substrate Complexes From Random Noise, PDB code: 6bie:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 6bie

Go back to Chlorine Binding Sites List in 6bie
Chlorine binding site 1 out of 7 in the Misreading Chaperone-Substrate Complexes From Random Noise


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Misreading Chaperone-Substrate Complexes From Random Noise within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl210

b:30.5
occ:1.00
 ZN A:ZN209 2.2 32.2 1.0
HE1 B:PHE119 2.9 33.6 1.0
HD1 B:PHE119 3.0 30.2 1.0
HA A:ARG62 3.0 36.9 1.0
HB3 A:ARG61 3.0 38.6 1.0
HB2 A:HIS65 3.1 34.6 1.0
O A:HOH357 3.2 39.0 1.0
HG2 A:ARG62 3.2 49.2 1.0
N3 A:IMD217 3.3 28.2 0.8
OE1 B:GLU120 3.5 36.6 1.0
O A:ARG61 3.5 31.4 1.0
CE1 B:PHE119 3.6 33.6 1.0
C A:ARG61 3.6 32.6 1.0
CD1 B:PHE119 3.6 30.2 1.0
N A:ARG62 3.7 34.2 1.0
OE2 B:GLU120 3.7 34.5 1.0
CA A:ARG62 3.8 36.9 1.0
ND1 A:HIS65 3.8 34.2 1.0
CB A:ARG61 3.8 38.6 1.0
CB A:HIS65 3.9 34.6 1.0
HB2 A:ARG61 3.9 38.6 1.0
CD B:GLU120 4.0 35.2 1.0
CG A:ARG62 4.0 49.2 1.0
HA B:GLU120 4.0 36.5 1.0
HG3 A:ARG62 4.0 49.2 1.0
HB3 A:HIS65 4.1 34.6 1.0
C4 A:IMD217 4.1 28.5 0.8
C2 A:IMD217 4.2 29.0 0.8
H4 A:IMD217 4.2 28.5 0.8
H A:ARG62 4.2 34.2 1.0
CG A:HIS65 4.2 34.2 1.0
H2 A:IMD217 4.3 29.0 0.8
CA A:ARG61 4.4 34.4 1.0
HE A:ARG61 4.4 46.9 1.0
CB A:ARG62 4.5 40.5 1.0
O B:HOH336 4.6 37.1 1.0
H A:HIS65 4.7 29.8 1.0
HA A:ARG61 4.8 34.4 1.0
CE1 A:HIS65 4.8 34.3 1.0
HB3 A:ARG62 4.9 40.5 1.0
O B:PHE119 4.9 33.0 1.0
CZ B:PHE119 4.9 36.5 1.0
C A:ARG62 4.9 32.8 1.0
CG B:PHE119 4.9 30.7 1.0
NE A:ARG61 4.9 46.9 1.0
CA B:GLU120 5.0 36.5 1.0

Chlorine binding site 2 out of 7 in 6bie

Go back to Chlorine Binding Sites List in 6bie
Chlorine binding site 2 out of 7 in the Misreading Chaperone-Substrate Complexes From Random Noise


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Misreading Chaperone-Substrate Complexes From Random Noise within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl211

b:62.5
occ:1.00
 ZN A:ZN201 2.2 32.9 1.0
H5 A:IMD215 2.8 26.9 0.8
O A:HOH339 3.3 41.8 1.0
OE1 A:GLU86 3.3 34.5 1.0
OE2 A:GLU86 3.4 32.6 1.0
CD A:GLU86 3.6 32.7 1.0
C5 A:IMD215 3.6 26.9 0.8
N1 A:IMD215 3.7 26.3 0.8
HB3 A:GLU86 4.4 31.4 1.0
CG A:GLU86 4.9 31.1 1.0
OE2 A:GLU87 4.9 58.6 1.0
O A:HOH403 5.0 64.9 1.0
C2 A:IMD215 5.0 26.5 0.8

Chlorine binding site 3 out of 7 in 6bie

Go back to Chlorine Binding Sites List in 6bie
Chlorine binding site 3 out of 7 in the Misreading Chaperone-Substrate Complexes From Random Noise


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Misreading Chaperone-Substrate Complexes From Random Noise within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl212

b:62.4
occ:1.00
 ZN A:ZN207 2.5 43.0 1.0
OD2 A:ASP71 3.2 38.3 1.0
CL A:CL213 3.7 75.1 1.0
O A:HOH350 4.0 51.0 1.0
CG A:ASP71 4.5 40.6 1.0
OD1 A:ASP71 5.0 41.9 1.0

Chlorine binding site 4 out of 7 in 6bie

Go back to Chlorine Binding Sites List in 6bie
Chlorine binding site 4 out of 7 in the Misreading Chaperone-Substrate Complexes From Random Noise


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Misreading Chaperone-Substrate Complexes From Random Noise within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl213

b:75.1
occ:1.00
 ZN A:ZN207 2.1 43.0 1.0
OD2 A:ASP71 3.4 38.3 1.0
OD1 A:ASP71 3.5 41.9 1.0
O A:HOH337 3.5 61.2 1.0
CL A:CL212 3.7 62.4 1.0
CG A:ASP71 3.8 40.6 1.0
O A:HOH334 3.8 53.6 1.0
H A:ASP71 4.8 40.1 1.0

Chlorine binding site 5 out of 7 in 6bie

Go back to Chlorine Binding Sites List in 6bie
Chlorine binding site 5 out of 7 in the Misreading Chaperone-Substrate Complexes From Random Noise


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Misreading Chaperone-Substrate Complexes From Random Noise within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl214

b:37.9
occ:1.00
 ZN A:ZN206 2.3 34.2 1.0
HN3 A:IMD216 2.7 34.9 1.0
HG2 B:ARG62 2.9 39.1 0.5
HD1 A:PHE119 2.9 40.7 1.0
HA B:ARG62 2.9 41.0 0.5
HG3 B:ARG61 2.9 60.1 1.0
HD1 B:HIS65 2.9 30.1 1.0
HA B:ARG62 3.0 41.7 0.5
HG3 B:ARG62 3.0 44.5 0.5
HE1 A:PHE119 3.1 43.1 1.0
HB2 B:HIS65 3.1 33.2 1.0
O A:HOH320 3.3 55.9 1.0
OE2 A:GLU120 3.4 35.5 1.0
N3 A:IMD216 3.5 34.9 1.0
O A:HOH343 3.5 59.2 1.0
CD1 A:PHE119 3.5 40.7 1.0
ND1 B:HIS65 3.6 30.1 1.0
CE1 A:PHE119 3.6 43.1 1.0
HG2 B:ARG61 3.6 60.1 1.0
CG B:ARG61 3.7 60.1 1.0
CG B:ARG62 3.7 39.1 0.5
CA B:ARG62 3.7 41.0 0.5
CB B:HIS65 3.8 33.2 1.0
CA B:ARG62 3.8 41.7 0.5
H4 A:IMD216 3.8 39.0 1.0
HB3 B:HIS65 3.8 33.2 1.0
HG3 B:ARG62 3.9 39.1 0.5
O B:ARG61 3.9 41.0 1.0
N B:ARG62 3.9 42.3 1.0
CG B:ARG62 4.0 44.5 0.5
C B:ARG61 4.0 45.6 1.0
C4 A:IMD216 4.0 39.0 1.0
CG B:HIS65 4.0 28.7 1.0
OE1 A:GLU120 4.1 44.7 1.0
CD A:GLU120 4.1 39.5 1.0
HA A:GLU120 4.1 39.5 1.0
HE B:ARG61 4.2 64.9 1.0
CB B:ARG62 4.3 43.4 0.5
HE B:ARG62 4.3 51.4 0.5
HE B:ARG62 4.3 46.1 0.5
HB3 B:ARG61 4.3 58.0 1.0
HG2 B:ARG62 4.4 44.5 0.5
H B:ARG62 4.5 42.3 1.0
CB B:ARG61 4.5 58.0 1.0
CB B:ARG62 4.5 45.5 0.5
CE1 B:HIS65 4.6 31.5 1.0
C2 A:IMD216 4.6 38.0 1.0
HB3 B:ARG62 4.6 43.4 0.5
NE B:ARG62 4.8 46.1 0.5
CD B:ARG61 4.8 69.1 1.0
O A:PHE119 4.8 44.9 1.0
NE B:ARG61 4.8 64.9 1.0
CD B:ARG62 4.8 41.6 0.5
NE B:ARG62 4.8 51.4 0.5
H B:HIS65 4.8 32.2 1.0
CG A:PHE119 4.9 38.5 1.0
CD B:ARG62 4.9 47.5 0.5
CA B:ARG61 4.9 51.6 1.0
HE1 B:HIS65 4.9 31.5 1.0
C B:ARG62 4.9 41.6 1.0
HD2 B:ARG62 4.9 47.5 0.5
CZ A:PHE119 5.0 41.6 1.0
HB3 A:PHE119 5.0 37.7 1.0
HD2 B:ARG61 5.0 69.1 1.0
H2 A:IMD216 5.0 38.0 1.0

Chlorine binding site 6 out of 7 in 6bie

Go back to Chlorine Binding Sites List in 6bie
Chlorine binding site 6 out of 7 in the Misreading Chaperone-Substrate Complexes From Random Noise


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Misreading Chaperone-Substrate Complexes From Random Noise within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl206

b:74.8
occ:1.00
 ZN B:ZN201 2.6 47.8 1.0
HE1 B:HIS96 2.8 40.7 1.0
HE2 B:HIS96 3.2 40.7 1.0
CE1 B:HIS96 3.5 40.7 1.0
HH11 B:ARG122 3.5 83.7 1.0
O B:THR124 3.6 50.9 1.0
O B:HOH322 3.6 64.3 1.0
OXT B:THR124 3.6 53.0 1.0
NE2 B:HIS96 3.6 40.7 1.0
OE1 B:GLN100 3.8 43.4 1.0
CD B:GLN100 3.8 40.1 1.0
HE B:ARG122 3.8 76.2 1.0
O B:HOH320 3.8 61.0 1.0
HE21 B:GLN100 3.9 42.3 1.0
NE2 B:GLN100 3.9 42.3 1.0
C B:THR124 4.0 50.6 1.0
HG3 B:GLN100 4.0 35.9 1.0
NH1 B:ARG122 4.1 83.7 1.0
CL B:CL207 4.2 49.7 1.0
HE22 B:GLN100 4.3 42.3 1.0
CG B:GLN100 4.5 35.9 1.0
NE B:ARG122 4.5 76.2 1.0
HH12 B:ARG122 4.5 83.7 1.0
CZ B:ARG122 4.7 80.3 1.0
ND1 B:HIS96 4.7 46.0 1.0
HG2 B:GLN100 4.8 35.9 1.0
CD2 B:HIS96 5.0 36.4 1.0

Chlorine binding site 7 out of 7 in 6bie

Go back to Chlorine Binding Sites List in 6bie
Chlorine binding site 7 out of 7 in the Misreading Chaperone-Substrate Complexes From Random Noise


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Misreading Chaperone-Substrate Complexes From Random Noise within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl207

b:49.7
occ:1.00
 ZN B:ZN201 2.2 47.8 1.0
HE2 B:HIS96 2.4 40.7 1.0
HH12 A:ARG61 2.8 48.0 1.0
HE1 A:MET64 2.9 43.8 1.0
HE2 B:PHE119 3.0 38.4 1.0
HE2 A:MET64 3.1 43.8 1.0
O B:HOH322 3.1 64.3 1.0
NE2 B:HIS96 3.2 40.7 1.0
OXT B:THR124 3.3 53.0 1.0
HD12 A:ILE68 3.3 37.8 1.0
HD13 A:ILE68 3.3 37.8 1.0
HG3 B:GLN100 3.4 35.9 1.0
CE A:MET64 3.4 43.8 1.0
HD2 B:HIS96 3.4 36.4 1.0
NH1 A:ARG61 3.6 48.0 1.0
HD11 A:ILE68 3.6 37.8 1.0
CD1 A:ILE68 3.6 37.8 1.0
CD2 B:HIS96 3.7 36.4 1.0
CE2 B:PHE119 3.7 38.4 1.0
O B:HOH320 3.7 61.0 1.0
O B:THR124 3.7 50.9 1.0
C B:THR124 3.8 50.6 1.0
HE3 A:MET64 3.8 43.8 1.0
HH11 A:ARG61 3.9 48.0 1.0
HZ B:PHE119 3.9 36.5 1.0
HH22 A:ARG61 4.1 48.4 1.0
CZ B:PHE119 4.1 36.5 1.0
CL B:CL206 4.2 74.8 1.0
CE1 B:HIS96 4.3 40.7 1.0
CG B:GLN100 4.4 35.9 1.0
CZ A:ARG61 4.5 46.2 1.0
HB3 A:MET64 4.6 34.2 1.0
HH11 B:ARG122 4.6 83.7 1.0
NH2 A:ARG61 4.6 48.4 1.0
HE1 B:HIS96 4.7 40.7 1.0
CD2 B:PHE119 4.7 36.6 1.0
HG2 B:MET97 4.7 29.3 1.0
HD2 B:PHE119 4.8 36.6 1.0
HG2 B:GLN100 4.8 35.9 1.0
HA B:THR124 4.9 57.4 1.0
HB2 B:GLN100 4.9 34.0 1.0
HB3 B:GLN100 4.9 34.0 1.0
SD A:MET64 4.9 49.1 1.0
CG B:HIS96 5.0 38.6 1.0
O B:HOH371 5.0 78.1 1.0
CA B:THR124 5.0 57.4 1.0
CD B:GLN100 5.0 40.1 1.0

Reference:

J.Wang, J.Wang. N/A N/A.
ISSN: ESSN 1545-9985
PubMed: 30297779
DOI: 10.1038/S41594-018-0144-3
Page generated: Sat Dec 12 12:46:25 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy