Chlorine in PDB 6bpl: E. Coli Msba in Complex with Lps and Inhibitor G907

Protein crystallography data

The structure of E. Coli Msba in Complex with Lps and Inhibitor G907, PDB code: 6bpl was solved by H.Ho, C.M.Koth, J.Payandeh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.90 / 2.91
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 74.747, 91.606, 111.013, 90.00, 89.39, 90.00
R / Rfree (%) 23.3 / 28.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the E. Coli Msba in Complex with Lps and Inhibitor G907 (pdb code 6bpl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the E. Coli Msba in Complex with Lps and Inhibitor G907, PDB code: 6bpl:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6bpl

Go back to Chlorine Binding Sites List in 6bpl
Chlorine binding site 1 out of 2 in the E. Coli Msba in Complex with Lps and Inhibitor G907


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of E. Coli Msba in Complex with Lps and Inhibitor G907 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl602

b:69.6
occ:1.00
CL9 A:AU7602 0.0 69.6 1.0
C8 A:AU7602 1.7 44.5 1.0
C3 A:AU7602 2.7 43.6 1.0
C7 A:AU7602 2.7 53.7 1.0
C2 A:AU7602 2.9 51.6 1.0
O A:ALA259 3.4 79.2 1.0
CB A:ALA259 3.5 64.9 1.0
C1 A:AU7602 3.6 55.5 1.0
C30 A:AU7602 3.8 54.4 1.0
CA A:ALA259 3.8 60.0 1.0
CG A:LEU263 4.0 72.0 1.0
C4 A:AU7602 4.0 49.4 1.0
C6 A:AU7602 4.0 61.5 1.0
C A:ALA259 4.1 62.5 1.0
CD2 A:LEU263 4.1 77.9 1.0
C19 A:AU7602 4.2 50.0 1.0
O13 A:AU7602 4.2 52.4 1.0
CB A:ALA262 4.3 64.4 1.0
C5 A:AU7602 4.5 54.1 1.0
CD1 A:LEU263 4.6 67.5 1.0
C29 A:AU7602 4.6 47.3 1.0
CD1 A:LEU171 4.7 55.2 1.0
C14 A:AU7602 4.7 61.3 1.0
N A:LEU263 4.9 73.9 1.0
CG1 A:VAL178 4.9 58.2 1.0
CG A:MET295 5.0 58.2 1.0

Chlorine binding site 2 out of 2 in 6bpl

Go back to Chlorine Binding Sites List in 6bpl
Chlorine binding site 2 out of 2 in the E. Coli Msba in Complex with Lps and Inhibitor G907


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of E. Coli Msba in Complex with Lps and Inhibitor G907 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl604

b:81.1
occ:1.00
CL9 B:AU7604 0.0 81.1 1.0
C8 B:AU7604 1.7 64.8 1.0
C3 B:AU7604 2.7 69.8 1.0
C7 B:AU7604 2.7 50.0 1.0
C2 B:AU7604 2.9 60.3 1.0
C1 B:AU7604 3.6 64.8 1.0
CB B:ALA259 3.6 60.1 1.0
CA B:ALA259 3.8 48.8 1.0
C30 B:AU7604 3.9 72.7 1.0
O B:ALA259 4.0 66.2 1.0
C4 B:AU7604 4.0 70.0 1.0
C6 B:AU7604 4.0 54.5 1.0
C19 B:AU7604 4.1 67.2 1.0
O13 B:AU7604 4.2 74.0 1.0
C29 B:AU7604 4.3 69.1 1.0
C B:ALA259 4.3 53.1 1.0
CD1 B:LEU171 4.4 63.0 1.0
C5 B:AU7604 4.5 67.8 1.0
CD1 B:LEU263 4.5 57.0 1.0
CG B:LEU263 4.6 51.3 1.0
CB B:ALA262 4.6 44.6 1.0
C14 B:AU7604 4.6 80.1 1.0
CG1 B:VAL178 4.7 62.5 1.0
C31 B:AU7604 4.9 60.5 1.0

Reference:

H.Ho, A.Miu, M.K.Alexander, N.K.Garcia, A.Oh, I.Zilberleyb, M.Reichelt, C.D.Austin, C.Tam, S.Shriver, H.Hu, S.S.Labadie, J.Liang, L.Wang, J.Wang, Y.Lu, H.E.Purkey, J.Quinn, Y.Franke, K.Clark, M.H.Beresini, M.W.Tan, B.D.Sellers, T.Maurer, M.F.T.Koehler, A.T.Wecksler, J.R.Kiefer, V.Verma, Y.Xu, M.Nishiyama, J.Payandeh, C.M.Koth. Structural Basis For Dual-Mode Inhibition of the Abc Transporter Msba. Nature V. 557 196 2018.
ISSN: ESSN 1476-4687
PubMed: 29720648
DOI: 10.1038/S41586-018-0083-5
Page generated: Sat Dec 12 12:47:01 2020

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