Chlorine in PDB 6bsh: Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in the Rna Hydrolysis Mode

Enzymatic activity of Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in the Rna Hydrolysis Mode

All present enzymatic activity of Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in the Rna Hydrolysis Mode:
2.7.7.7;

Protein crystallography data

The structure of Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in the Rna Hydrolysis Mode, PDB code: 6bsh was solved by L.Tian, M.Kim, W.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.20 / 2.65
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 161.792, 161.792, 128.773, 90.00, 90.00, 120.00
R / Rfree (%) 18.9 / 22.7

Other elements in 6bsh:

The structure of Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in the Rna Hydrolysis Mode also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Calcium (Ca) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in the Rna Hydrolysis Mode (pdb code 6bsh). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in the Rna Hydrolysis Mode, PDB code: 6bsh:

Chlorine binding site 1 out of 1 in 6bsh

Go back to Chlorine Binding Sites List in 6bsh
Chlorine binding site 1 out of 1 in the Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in the Rna Hydrolysis Mode


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Hiv-1 Rt Complexed with Rna/Dna Hybrid in the Rna Hydrolysis Mode within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl601

b:64.2
occ:1.00
 CL A:EFZ601 0.0 64.2 1.0
C4 A:EFZ601 1.7 50.5 1.0
C3 A:EFZ601 2.5 49.5 1.0
C5 A:EFZ601 2.6 47.4 1.0
CB A:LEU234 3.6 49.8 1.0
O A:HIS235 3.6 59.6 1.0
CD2 A:PHE227 3.7 57.7 1.0
CG1 A:VAL106 3.8 48.3 1.0
CG2 A:VAL106 3.8 59.6 1.0
C2 A:EFZ601 3.9 55.4 1.0
O A:LEU234 3.9 62.2 1.0
CB A:VAL106 3.9 57.1 1.0
C6 A:EFZ601 3.9 50.5 1.0
C A:LEU234 4.0 58.8 1.0
CE2 A:PHE227 4.1 58.4 1.0
C A:HIS235 4.1 56.7 1.0
CD1 A:LEU234 4.4 44.8 1.0
OH A:TYR318 4.4 51.1 1.0
CA A:LEU234 4.4 52.8 1.0
N A:HIS235 4.5 54.9 1.0
CG A:LEU234 4.6 50.8 1.0
C1 A:EFZ601 4.7 44.4 1.0
N A:PRO236 4.7 65.0 1.0
CA A:HIS235 4.7 58.1 1.0
CA A:PRO236 4.8 59.2 1.0
CG A:PHE227 4.8 55.1 1.0
F3 A:EFZ601 4.9 62.1 1.0

Reference:

L.Tian, M.S.Kim, H.Li, J.Wang, W.Yang. Structure of Hiv-1 Reverse Transcriptase Cleaving Rna in An Rna/Dna Hybrid. Proc. Natl. Acad. Sci. V. 115 507 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29295939
DOI: 10.1073/PNAS.1719746115
Page generated: Sat Dec 12 12:47:21 2020

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