Chlorine in PDB 6bv8: Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone

Enzymatic activity of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone

All present enzymatic activity of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone:
3.1.26.5;

Protein crystallography data

The structure of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone, PDB code: 6bv8 was solved by A.Karasik, N.Wu, C.A.Fierke, M.Koutmos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 86.99 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.677, 111.332, 139.389, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 23.6

Other elements in 6bv8:

The structure of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone (pdb code 6bv8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone, PDB code: 6bv8:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6bv8

Go back to Chlorine Binding Sites List in 6bv8
Chlorine binding site 1 out of 2 in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl604

b:33.9
occ:1.00
 HZ3 A:LYS451 2.6 31.9 1.0
HD3 A:LYS451 3.2 32.2 1.0
NZ A:LYS451 3.5 31.9 1.0
HE2 A:LYS451 3.6 33.0 1.0
CE A:LYS451 3.8 33.0 1.0
CD A:LYS451 3.9 32.2 1.0
HZ1 A:LYS451 3.9 31.9 1.0
HZ2 A:LYS451 3.9 31.9 1.0
HD2 A:LYS451 4.4 32.2 1.0
HE3 A:LYS451 4.8 33.0 1.0
HG2 A:LYS451 4.9 31.0 1.0
O A:HOH931 4.9 46.6 1.0

Chlorine binding site 2 out of 2 in 6bv8

Go back to Chlorine Binding Sites List in 6bv8
Chlorine binding site 2 out of 2 in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl605

b:33.5
occ:1.00
 HH12 A:ARG431 2.5 33.2 1.0
HH22 A:ARG431 2.6 31.6 1.0
O A:HOH911 3.1 31.5 1.0
NH1 A:ARG431 3.3 33.2 1.0
NH2 A:ARG431 3.3 31.6 1.0
CZ A:ARG431 3.8 31.4 1.0
HH11 A:ARG431 3.9 33.2 1.0
HH21 A:ARG431 4.0 31.6 1.0
O A:HOH867 4.4 39.2 1.0
O A:HOH735 4.6 24.3 1.0
O A:HOH925 4.7 56.1 1.0
OD1 A:ASP395 4.9 33.3 1.0

Reference:

N.Wu, A.Karasik, L.Muehlbauer, M.Koutmos, C.A.Fierke. Inhibition of Protein-Only Rnase P with Gambogic Acid and Juglone To Be Published.
Page generated: Sat Dec 12 12:47:35 2020

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