Atomistry » Chlorine » PDB 6bpl-6bvi » 6bv5
Atomistry »
  Chlorine »
    PDB 6bpl-6bvi »
      6bv5 »

Chlorine in PDB 6bv8: Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone

Enzymatic activity of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone

All present enzymatic activity of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone:
3.1.26.5;

Protein crystallography data

The structure of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone, PDB code: 6bv8 was solved by A.Karasik, N.Wu, C.A.Fierke, M.Koutmos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 86.99 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.677, 111.332, 139.389, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 23.6

Other elements in 6bv8:

The structure of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Zinc (Zn) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone (pdb code 6bv8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone, PDB code: 6bv8:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 6bv8

Go back to Chlorine Binding Sites List in 6bv8
Chlorine binding site 1 out of 2 in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl604

b:33.9
occ:1.00
 HZ3 A:LYS451 2.6 31.9 1.0
HD3 A:LYS451 3.2 32.2 1.0
NZ A:LYS451 3.5 31.9 1.0
HE2 A:LYS451 3.6 33.0 1.0
CE A:LYS451 3.8 33.0 1.0
CD A:LYS451 3.9 32.2 1.0
HZ1 A:LYS451 3.9 31.9 1.0
HZ2 A:LYS451 3.9 31.9 1.0
HD2 A:LYS451 4.4 32.2 1.0
HE3 A:LYS451 4.8 33.0 1.0
HG2 A:LYS451 4.9 31.0 1.0
O A:HOH931 4.9 46.6 1.0

Chlorine binding site 2 out of 2 in 6bv8

Go back to Chlorine Binding Sites List in 6bv8
Chlorine binding site 2 out of 2 in the Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Proteinaceous Rnase P 1 (PRORP1) From A. Thaliana Complexed with Mn After 3-Hour Soak with Juglone within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl605

b:33.5
occ:1.00
 HH12 A:ARG431 2.5 33.2 1.0
HH22 A:ARG431 2.6 31.6 1.0
O A:HOH911 3.1 31.5 1.0
NH1 A:ARG431 3.3 33.2 1.0
NH2 A:ARG431 3.3 31.6 1.0
CZ A:ARG431 3.8 31.4 1.0
HH11 A:ARG431 3.9 33.2 1.0
HH21 A:ARG431 4.0 31.6 1.0
O A:HOH867 4.4 39.2 1.0
O A:HOH735 4.6 24.3 1.0
O A:HOH925 4.7 56.1 1.0
OD1 A:ASP395 4.9 33.3 1.0

Reference:

N.Wu, A.Karasik, L.Muehlbauer, M.Koutmos, C.A.Fierke. Inhibition of Protein-Only Rnase P with Gambogic Acid and Juglone To Be Published.
Page generated: Sat Dec 12 12:47:35 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy