Chlorine in PDB 6bvn: Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra

The structure of Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra also contains other interesting chemical elements:

Fluorine

(F)

1 atom

The binding sites of Chlorine atom in the Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra (pdb code 6bvn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra, PDB code: 6bvn:

Chlorine binding site 1 out of 1 in the Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cryo-Em Structure of Hepatitis B Virus T=3 Capsid in Complex with the Fluorescent Allosteric Modulator Hap-Tamra within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl201 b:67.6 occ:1.00 CL1 B:E9D201 0.0 67.6 1.0 C29 B:E9D201 1.8 67.6 1.0 C30 B:E9D201 2.7 67.6 1.0 H30 B:E9D201 2.8 67.6 1.0 C28 B:E9D201 2.8 67.6 1.0 OG B:SER106 3.1 55.3 1.0 C41 B:E9D201 3.2 67.6 1.0 C32 B:E9D201 3.3 67.6 1.0 O05 B:E9D201 3.3 67.6 1.0 C42 B:E9D201 3.4 67.6 1.0 CG2 B:ILE105 3.5 53.7 1.0 C33 B:E9D201 3.5 67.6 1.0 O06 B:E9D201 3.5 67.6 1.0 N B:SER106 3.8 55.3 1.0 CB B:ILE105 4.0 53.7 1.0 C31 B:E9D201 4.0 67.6 1.0 CD1 B:TRP102 4.0 54.0 1.0 CA B:SER106 4.1 55.3 1.0 C27 B:E9D201 4.1 67.6 1.0 NE1 B:TRP102 4.1 54.0 1.0 CB B:SER106 4.1 55.3 1.0 C B:ILE105 4.3 53.7 1.0 N04 B:E9D201 4.3 67.6 1.0 O B:TRP102 4.5 54.0 1.0 C26 B:E9D201 4.6 67.6 1.0 C34 B:E9D201 4.6 67.6 1.0 CA B:ILE105 4.8 53.7 1.0 O B:ILE105 4.8 53.7 1.0 H27 B:E9D201 4.8 67.6 1.0 CD2 B:LEU30 5.0 62.6 1.0 CG B:TRP102 5.0 54.0 1.0

C.J.Schlicksup, J.C.Wang, S.Francis, B.Venkatakrishnan, W.W.Turner, M.Vannieuwenhze, A.Zlotnick. Hepatitis B Virus Core Protein Allosteric Modulators Can Distort and Disrupt Intact Capsids. Elife V. 7 2018.
ISSN: ESSN 2050-084X
PubMed: 29377794
DOI: 10.7554/ELIFE.31473