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Chlorine in PDB 6c5h: S25-5 Fab in Complex with Chlamydiaceae-Specific Lps Antigen

Protein crystallography data

The structure of S25-5 Fab in Complex with Chlamydiaceae-Specific Lps Antigen, PDB code: 6c5h was solved by S.V.Evans, O.Haji-Ghassemi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.99
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.146, 128.957, 135.428, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 22.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the S25-5 Fab in Complex with Chlamydiaceae-Specific Lps Antigen (pdb code 6c5h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the S25-5 Fab in Complex with Chlamydiaceae-Specific Lps Antigen, PDB code: 6c5h:

Chlorine binding site 1 out of 1 in 6c5h

Go back to Chlorine Binding Sites List in 6c5h
Chlorine binding site 1 out of 1 in the S25-5 Fab in Complex with Chlamydiaceae-Specific Lps Antigen


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of S25-5 Fab in Complex with Chlamydiaceae-Specific Lps Antigen within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl301

b:30.0
occ:0.50
N L:ALA80 3.2 24.3 1.0
O L:HOH512 3.2 38.2 1.0
CB L:GLU79 3.4 26.4 1.0
CA L:GLU79 3.6 24.5 1.0
C L:GLU79 3.9 24.8 1.0
CD2 L:LEU15 3.9 31.6 1.0
CG L:GLU79 3.9 27.8 1.0
CB L:ALA80 4.0 28.1 1.0
CA L:ALA80 4.2 27.0 1.0
CD L:GLU79 4.3 30.3 1.0
OE1 L:GLU79 4.3 33.8 1.0
N L:GLU79 4.9 22.5 1.0

Reference:

O.Haji-Ghassemi, S.Muller-Loennies, C.L.Brooks, C.R.Mackenzie, N.Caveney, F.Van Petegem, L.Brade, P.Kosma, H.Brade, S.V.Evans. Subtle Changes in the Combining Site of the Chlamydiaceae-Specific Mab S25-23 Increase the Antibody-Carbohydrate Binding Affinity By An Order of Magnitude. Biochemistry V. 58 714 2019.
ISSN: ISSN 1520-4995
PubMed: 30571096
DOI: 10.1021/ACS.BIOCHEM.8B00318
Page generated: Fri Jul 26 23:18:18 2024

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