Chlorine in PDB 6c8t: The Structure of Mppp Soaked with the Substrate L-Arg

Protein crystallography data

The structure of The Structure of Mppp Soaked with the Substrate L-Arg, PDB code: 6c8t was solved by L.Han, N.R.Silvaggi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.06 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 85.792, 108.425, 196.219, 90.00, 90.00, 90.00
R / Rfree (%) 14.6 / 19.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Structure of Mppp Soaked with the Substrate L-Arg (pdb code 6c8t). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the The Structure of Mppp Soaked with the Substrate L-Arg, PDB code: 6c8t:

Chlorine binding site 1 out of 1 in 6c8t

Go back to Chlorine Binding Sites List in 6c8t
Chlorine binding site 1 out of 1 in the The Structure of Mppp Soaked with the Substrate L-Arg


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of Mppp Soaked with the Substrate L-Arg within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl401

b:35.0
occ:1.00
HH22 D:ARG352 2.4 23.4 1.0
HH12 D:ARG352 2.5 23.3 1.0
HD21 D:ASN160 2.6 24.0 1.0
HE3 D:LLP221 2.8 25.3 1.0
HA3 D:GLY28 2.9 27.8 1.0
H D:GLY28 3.2 24.9 1.0
NH2 D:ARG352 3.2 19.5 1.0
NH1 D:ARG352 3.3 19.5 1.0
ND2 D:ASN160 3.4 20.0 1.0
HE1 D:PHE115 3.5 61.4 1.0
NZ D:LLP221 3.6 28.6 1.0
HD22 D:ASN160 3.6 24.0 1.0
CZ D:ARG352 3.7 19.5 1.0
CA D:GLY28 3.7 23.1 1.0
CE D:LLP221 3.7 21.1 1.0
N D:GLY28 3.7 20.7 1.0
HH21 D:ARG352 3.9 23.4 1.0
HH11 D:ARG352 4.0 23.3 1.0
CE1 D:PHE115 4.1 51.1 1.0
HG11 D:VAL309 4.1 31.2 1.0
HD1 D:PHE115 4.2 66.7 1.0
HA2 D:GLY28 4.2 27.8 1.0
O3 D:LLP221 4.3 30.6 1.0
HD3 D:LLP221 4.3 33.0 1.0
HZ D:PHE191 4.3 29.1 1.0
C4' D:LLP221 4.4 28.0 1.0
CG D:ASN160 4.4 20.4 1.0
CD1 D:PHE115 4.5 55.5 1.0
HE2 D:LLP221 4.5 25.3 1.0
OD1 D:ASN160 4.7 21.1 1.0
CD D:LLP221 4.7 27.5 1.0
H4'1 D:LLP221 4.7 33.6 1.0
C D:GLY28 4.7 24.2 1.0
HO3 D:LLP221 4.8 36.7 1.0
HA D:ASP27 4.9 38.5 0.4
HE1 D:PHE339 4.9 31.7 1.0
HA D:ASP27 4.9 39.0 0.6
C D:ASP27 5.0 28.9 0.4
C D:ASP27 5.0 28.7 0.6
NE D:ARG352 5.0 19.4 1.0

Reference:

L.Han, N.Vuksanovic, S.A.Oehm, T.G.Fenske, A.W.Schwabacher, N.R.Silvaggi. Streptomyces Wadayamensis Mppp Is A Plp-Dependent Oxidase, Not An Oxygenase. Biochemistry V. 57 3252 2018.
ISSN: ISSN 1520-4995
PubMed: 29473729
DOI: 10.1021/ACS.BIOCHEM.8B00130
Page generated: Sat Dec 12 12:48:51 2020

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