Chlorine in PDB 6cdr: Human CTBP1 (28-378)
Protein crystallography data
The structure of Human CTBP1 (28-378), PDB code: 6cdr
was solved by
W.E.Royer,
A.G.Bellesis,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
36.26 /
2.40
|
Space group
|
P 64 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
89.218,
89.218,
164.233,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
23.5 /
26.2
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Human CTBP1 (28-378)
(pdb code 6cdr). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the
Human CTBP1 (28-378), PDB code: 6cdr:
Jump to Chlorine binding site number:
1;
2;
Chlorine binding site 1 out
of 2 in 6cdr
Go back to
Chlorine Binding Sites List in 6cdr
Chlorine binding site 1 out
of 2 in the Human CTBP1 (28-378)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Human CTBP1 (28-378) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl402
b:42.9
occ:1.00
|
HE2
|
A:HIS315
|
2.3
|
41.7
|
1.0
|
HH12
|
A:ARG266
|
2.6
|
44.0
|
1.0
|
HH22
|
A:ARG266
|
2.6
|
46.7
|
1.0
|
NE2
|
A:HIS315
|
3.2
|
34.8
|
1.0
|
H4N
|
A:NAI401
|
3.3
|
41.8
|
1.0
|
NH1
|
A:ARG266
|
3.4
|
36.7
|
1.0
|
NH2
|
A:ARG266
|
3.4
|
38.9
|
1.0
|
C3N
|
A:NAI401
|
3.6
|
33.3
|
1.0
|
HH22
|
A:ARG97
|
3.7
|
49.9
|
1.0
|
C2N
|
A:NAI401
|
3.8
|
32.1
|
1.0
|
CZ
|
A:ARG266
|
3.8
|
36.3
|
1.0
|
C4N
|
A:NAI401
|
3.9
|
34.9
|
1.0
|
C7N
|
A:NAI401
|
3.9
|
32.9
|
1.0
|
H71N
|
A:NAI401
|
4.0
|
39.9
|
1.0
|
HH11
|
A:ARG266
|
4.0
|
44.0
|
1.0
|
CE1
|
A:HIS315
|
4.1
|
37.2
|
1.0
|
HH21
|
A:ARG266
|
4.1
|
46.7
|
1.0
|
H2N
|
A:NAI401
|
4.1
|
38.5
|
1.0
|
N7N
|
A:NAI401
|
4.1
|
33.2
|
1.0
|
HE1
|
A:HIS315
|
4.1
|
44.6
|
1.0
|
HH21
|
A:ARG97
|
4.2
|
49.9
|
1.0
|
CD2
|
A:HIS315
|
4.2
|
35.0
|
1.0
|
N1N
|
A:NAI401
|
4.2
|
31.9
|
1.0
|
HD2
|
A:HIS315
|
4.2
|
42.0
|
1.0
|
H
|
A:GLY101
|
4.2
|
43.9
|
1.0
|
NH2
|
A:ARG97
|
4.3
|
41.6
|
1.0
|
C5N
|
A:NAI401
|
4.3
|
34.0
|
1.0
|
H21
|
A:EDO404
|
4.3
|
41.8
|
1.0
|
HO2
|
A:EDO404
|
4.4
|
48.7
|
1.0
|
O2
|
A:EDO404
|
4.4
|
40.6
|
1.0
|
HB3
|
A:TRP318
|
4.5
|
39.8
|
1.0
|
C6N
|
A:NAI401
|
4.5
|
33.7
|
1.0
|
O2D
|
A:NAI401
|
4.5
|
37.1
|
1.0
|
HB3
|
A:HIS77
|
4.5
|
46.9
|
1.0
|
O7N
|
A:NAI401
|
4.5
|
34.8
|
1.0
|
HD1
|
A:TRP318
|
4.6
|
40.4
|
1.0
|
O1
|
A:EDO404
|
4.6
|
42.5
|
1.0
|
H
|
A:SER100
|
4.7
|
44.1
|
1.0
|
H72N
|
A:NAI401
|
4.7
|
39.9
|
1.0
|
H42N
|
A:NAI401
|
4.9
|
41.8
|
1.0
|
C2
|
A:EDO404
|
4.9
|
34.9
|
1.0
|
HA3
|
A:GLY101
|
4.9
|
44.9
|
1.0
|
CD1
|
A:TRP318
|
4.9
|
33.7
|
1.0
|
HO2N
|
A:NAI401
|
5.0
|
44.5
|
1.0
|
H5N
|
A:NAI401
|
5.0
|
40.8
|
1.0
|
|
Chlorine binding site 2 out
of 2 in 6cdr
Go back to
Chlorine Binding Sites List in 6cdr
Chlorine binding site 2 out
of 2 in the Human CTBP1 (28-378)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Human CTBP1 (28-378) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl403
b:65.4
occ:1.00
|
HE22
|
A:GLN218
|
1.9
|
61.1
|
1.0
|
NE2
|
A:GLN218
|
2.7
|
50.9
|
1.0
|
HE21
|
A:GLN218
|
3.2
|
61.1
|
1.0
|
CD
|
A:GLN218
|
3.7
|
50.0
|
1.0
|
OE1
|
A:GLN218
|
3.8
|
52.4
|
1.0
|
O
|
A:HOH595
|
3.8
|
46.7
|
1.0
|
HD2
|
A:HIS229
|
4.1
|
60.8
|
1.0
|
CD2
|
A:HIS229
|
4.2
|
50.7
|
1.0
|
HD21
|
A:LEU201
|
4.4
|
53.9
|
1.0
|
HD11
|
A:LEU201
|
4.4
|
50.8
|
1.0
|
NE2
|
A:HIS229
|
4.5
|
51.8
|
1.0
|
HD22
|
A:LEU201
|
4.7
|
53.9
|
1.0
|
CG
|
A:HIS229
|
4.7
|
49.0
|
1.0
|
HD13
|
A:LEU201
|
4.8
|
50.8
|
1.0
|
HB3
|
A:HIS229
|
4.9
|
51.7
|
1.0
|
|
Reference:
A.G.Bellesis,
A.M.Jecrois,
J.A.Hayes,
C.A.Schiffer,
W.E.Royer.
Assembly of Human C-Terminal Binding Protein (Ctbp) Into Tetramers. J. Biol. Chem. V. 293 9101 2018.
ISSN: ESSN 1083-351X
PubMed: 29700119
DOI: 10.1074/JBC.RA118.002514
Page generated: Sat Dec 12 12:49:27 2020
|