Chlorine in PDB 6cly: Structure of Human Dna Polymerase Beta Complexed with 8-Clg As the Template Base in A 1-Nucleotide Gapped Dna

Enzymatic activity of Structure of Human Dna Polymerase Beta Complexed with 8-Clg As the Template Base in A 1-Nucleotide Gapped Dna

All present enzymatic activity of Structure of Human Dna Polymerase Beta Complexed with 8-Clg As the Template Base in A 1-Nucleotide Gapped Dna:
2.7.7.7;

Protein crystallography data

The structure of Structure of Human Dna Polymerase Beta Complexed with 8-Clg As the Template Base in A 1-Nucleotide Gapped Dna, PDB code: 6cly was solved by M.-C.Koag, S.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.92 / 2.19
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.772, 79.668, 54.967, 90.00, 105.60, 90.00
R / Rfree (%) 21.9 / 26.8

Other elements in 6cly:

The structure of Structure of Human Dna Polymerase Beta Complexed with 8-Clg As the Template Base in A 1-Nucleotide Gapped Dna also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Human Dna Polymerase Beta Complexed with 8-Clg As the Template Base in A 1-Nucleotide Gapped Dna (pdb code 6cly). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of Human Dna Polymerase Beta Complexed with 8-Clg As the Template Base in A 1-Nucleotide Gapped Dna, PDB code: 6cly:

Chlorine binding site 1 out of 1 in 6cly

Go back to Chlorine Binding Sites List in 6cly
Chlorine binding site 1 out of 1 in the Structure of Human Dna Polymerase Beta Complexed with 8-Clg As the Template Base in A 1-Nucleotide Gapped Dna


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Human Dna Polymerase Beta Complexed with 8-Clg As the Template Base in A 1-Nucleotide Gapped Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
T:Cl6

b:45.1
occ:1.00
 CL T:F746 0.0 45.1 1.0
C8 T:F746 1.7 46.3 1.0
N9 T:F746 2.7 44.6 1.0
N7 T:F746 2.7 41.6 1.0
C1' T:F746 3.1 40.7 1.0
O4' T:DT7 3.2 41.3 1.0
O A:HOH569 3.3 37.5 1.0
C4 T:F746 3.8 42.5 1.0
C5 T:F746 3.8 41.2 1.0
C4' T:DT7 3.8 41.7 1.0
OH A:TYR271 3.9 48.5 1.0
O4' T:F746 4.0 43.7 1.0
C1' T:DT7 4.0 37.0 1.0
C2' T:F746 4.3 38.4 1.0
C5' T:DT7 4.3 39.0 1.0
N1 T:DT7 4.5 42.5 1.0
O2 T:DT7 4.7 36.5 1.0
O A:HOH533 4.7 39.1 1.0
C2 T:DT7 4.8 35.1 1.0
CZ A:TYR271 4.9 47.4 1.0

Reference:

M.-C.Koag, S.Lee. Structure of Human Dna Polymerase Beta Complexed with 8-Clg As the Template Base in A 1-Nucleotide Gapped Dna To Be Published.
Page generated: Sat Dec 12 12:49:55 2020

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