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Chlorine in PDB 6cpq: Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Ctp

Enzymatic activity of Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Ctp

All present enzymatic activity of Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Ctp:
2.7.7.7;

Protein crystallography data

The structure of Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Ctp, PDB code: 6cpq was solved by M.-C.Koag, S.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.85 / 1.93
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 50.829, 80.243, 55.836, 90.00, 107.80, 90.00
R / Rfree (%) 19.1 / 23.9

Other elements in 6cpq:

The structure of Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Ctp also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Ctp (pdb code 6cpq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Ctp, PDB code: 6cpq:

Chlorine binding site 1 out of 1 in 6cpq

Go back to Chlorine Binding Sites List in 6cpq
Chlorine binding site 1 out of 1 in the Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Ctp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Ctp within 5.0Å range:
probe atom residue distance (Å) B Occ
T:Cl6

b:24.6
occ:1.00
 CL T:F746 0.0 24.6 1.0
C8 T:F746 1.7 23.3 1.0
N7 T:F746 2.7 20.9 1.0
N9 T:F746 2.7 23.1 1.0
OP1 T:F746 3.0 60.4 1.0
C1' T:F746 3.3 20.2 1.0
C2' T:F746 3.4 18.4 1.0
O4' T:F746 3.5 24.9 1.0
C5' T:F746 3.5 31.8 1.0
O5' T:F746 3.6 40.8 1.0
O A:HOH730 3.6 32.5 1.0
O T:HOH107 3.7 21.8 1.0
C5 T:F746 3.8 22.4 1.0
C4 T:F746 3.8 21.6 1.0
O T:HOH144 3.8 40.4 1.0
C7 T:DT7 3.9 21.4 1.0
C4' T:F746 3.9 24.0 1.0
P T:F746 3.9 61.0 1.0
C3' T:F746 4.1 21.2 1.0
CE A:LYS280 4.3 30.7 1.0
CG A:LYS280 4.4 29.7 1.0
O3' T:DC5 4.5 59.6 1.0
CD A:LYS280 4.6 29.3 1.0
C5 T:DT7 4.6 19.8 1.0

Reference:

M.-C.Koag, S.Lee. Structure of Human Dna Polymerase Beta Complexed with 8-Clg in the Template Base Paired with Incoming Non-Hydrolyzable Ctp To Be Published.
Page generated: Fri Jul 26 23:39:17 2024

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