Chlorine in PDB 6czl: Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form

Protein crystallography data

The structure of Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form, PDB code: 6czl was solved by M.Ruszkowski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.17 / 2.92
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 99.826, 195.621, 100.209, 90.00, 95.85, 90.00
R / Rfree (%) 19.7 / 25

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form (pdb code 6czl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form, PDB code: 6czl:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 6czl

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Chlorine binding site 1 out of 6 in the Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:0.9
occ:1.00
 OG1 A:THR219 3.1 0.1 1.0
CG1 A:VAL214 3.7 0.5 1.0
N A:SER215 3.8 0.2 1.0
N A:GLY217 3.8 0.7 1.0
CB A:THR219 3.9 0.1 1.0
CA A:VAL214 4.0 99.9 1.0
N A:SER216 4.2 0.9 1.0
N A:THR219 4.3 0.8 1.0
CA A:GLY217 4.4 0.2 1.0
N A:THR218 4.4 0.0 1.0
C A:VAL214 4.4 0.2 1.0
CB A:VAL214 4.5 99.8 1.0
OG A:SER215 4.6 0.6 1.0
O A:LEU213 4.7 89.8 1.0
C A:SER216 4.7 0.2 1.0
CB A:SER216 4.7 0.7 1.0
CA A:SER216 4.8 0.9 1.0
C A:SER215 4.8 0.3 1.0
CA A:THR219 4.8 0.8 1.0
CA A:SER215 4.8 0.4 1.0
C A:GLY217 4.8 0.3 1.0

Chlorine binding site 2 out of 6 in 6czl

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Chlorine binding site 2 out of 6 in the Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl401

b:0.7
occ:1.00
 OG B:SER216 3.2 0.3 1.0
N B:GLY217 3.2 0.8 1.0
OG1 B:THR219 3.2 0.8 1.0
N B:SER215 3.6 1.0 1.0
N B:SER216 3.7 0.5 1.0
CG1 B:VAL214 3.9 99.5 1.0
CA B:GLY217 3.9 0.9 1.0
CB B:THR219 4.1 0.9 1.0
CA B:VAL214 4.1 99.9 1.0
C B:SER216 4.2 0.8 1.0
C B:GLY217 4.2 0.6 1.0
CA B:SER216 4.2 0.0 1.0
CB B:SER216 4.2 0.0 1.0
N B:THR218 4.3 0.0 1.0
N B:THR219 4.3 0.2 1.0
C B:SER215 4.3 0.1 1.0
C B:VAL214 4.4 0.4 1.0
OG B:SER215 4.4 0.9 1.0
CA B:SER215 4.5 0.8 1.0
CB B:VAL214 4.6 98.8 1.0
CA B:THR219 4.8 0.7 1.0
O B:GLY217 4.8 0.7 1.0
O B:LEU213 5.0 90.4 1.0

Chlorine binding site 3 out of 6 in 6czl

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Chlorine binding site 3 out of 6 in the Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl401

b:93.9
occ:1.00
 O C:HOH501 3.1 60.2 1.0
N C:SER215 3.4 96.3 1.0
OG1 C:THR219 3.6 0.0 1.0
N C:GLY217 3.6 0.1 1.0
CG1 C:VAL214 3.9 89.5 1.0
CA C:VAL214 3.9 88.0 1.0
N C:SER216 4.1 0.9 1.0
OG C:SER216 4.1 0.2 1.0
CA C:GLY217 4.2 0.4 1.0
C C:VAL214 4.2 91.8 1.0
OG C:SER215 4.3 0.5 1.0
CB C:THR219 4.4 0.6 1.0
CA C:SER215 4.4 0.5 1.0
C C:SER215 4.4 0.8 1.0
CB C:VAL214 4.5 88.5 1.0
N C:THR218 4.6 0.7 1.0
C C:SER216 4.7 0.7 1.0
C C:GLY217 4.7 0.6 1.0
O C:LEU213 4.7 80.5 1.0
N C:THR219 4.7 0.7 1.0
CA C:SER216 4.8 0.5 1.0
CB C:SER215 4.9 0.8 1.0

Chlorine binding site 4 out of 6 in 6czl

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Chlorine binding site 4 out of 6 in the Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl401

b:0.2
occ:1.00
 N D:GLY217 3.2 0.5 1.0
OG1 D:THR219 3.2 0.2 1.0
OG D:SER216 3.4 0.5 1.0
N D:SER215 3.6 96.5 1.0
CA D:GLY217 3.7 0.1 1.0
N D:SER216 3.8 0.8 1.0
N D:THR218 3.9 0.5 1.0
CB D:THR219 4.0 0.5 1.0
N D:THR219 4.0 0.8 1.0
CG1 D:VAL214 4.1 86.3 1.0
C D:GLY217 4.1 0.4 1.0
C D:SER216 4.2 0.5 1.0
CA D:VAL214 4.2 85.2 1.0
CA D:SER216 4.3 0.3 1.0
OG D:SER215 4.4 0.9 1.0
C D:SER215 4.4 0.3 1.0
C D:VAL214 4.4 89.8 1.0
CB D:SER216 4.4 0.5 1.0
CA D:SER215 4.5 0.7 1.0
CA D:THR219 4.6 0.8 1.0
CB D:VAL214 4.8 85.5 1.0
C D:THR218 5.0 0.8 1.0

Chlorine binding site 5 out of 6 in 6czl

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Chlorine binding site 5 out of 6 in the Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl401

b:0.6
occ:1.00
 N E:GLY217 3.1 0.4 1.0
OG E:SER216 3.5 0.3 1.0
OG1 E:THR219 3.6 0.5 1.0
CA E:GLY217 3.6 1.0 1.0
N E:THR218 3.8 0.0 1.0
CG1 E:VAL214 3.8 0.5 1.0
N E:THR219 3.9 0.9 1.0
C E:GLY217 3.9 0.1 1.0
CB E:THR219 3.9 0.8 1.0
N E:SER215 4.0 0.5 1.0
N E:SER216 4.0 0.0 1.0
C E:SER216 4.2 0.9 1.0
CA E:SER216 4.5 0.0 1.0
CA E:VAL214 4.5 0.8 1.0
CA E:THR219 4.5 0.1 1.0
CB E:SER216 4.5 0.6 1.0
C E:SER215 4.7 1.0 1.0
CB E:VAL214 4.7 0.2 1.0
O E:GLY217 4.8 0.6 1.0
C E:THR218 4.8 0.3 1.0
C E:VAL214 4.8 0.2 1.0
CA E:THR218 4.8 0.7 1.0
OG E:SER215 4.9 0.4 1.0
CA E:SER215 4.9 0.9 1.0
N E:LEU220 4.9 0.3 1.0

Chlorine binding site 6 out of 6 in 6czl

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Chlorine binding site 6 out of 6 in the Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Medicago Truncatula Atp-Phosphoribosyltransferase in Relaxed Form within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl401

b:0.5
occ:1.00
 N F:GLY217 3.2 0.8 1.0
N F:THR218 3.3 1.0 1.0
CG1 F:VAL214 3.6 0.1 1.0
OG1 F:THR219 3.7 0.9 1.0
CA F:GLY217 3.8 0.3 1.0
C F:GLY217 3.9 0.3 1.0
N F:THR219 3.9 0.2 1.0
N F:SER216 4.0 0.8 1.0
OG1 F:THR218 4.0 0.8 1.0
N F:SER215 4.1 1.0 1.0
C F:SER216 4.2 0.1 1.0
CA F:THR218 4.3 0.8 1.0
CB F:SER216 4.4 0.3 1.0
CB F:THR219 4.4 0.8 1.0
CA F:SER216 4.4 0.8 1.0
CB F:THR218 4.5 0.9 1.0
CA F:VAL214 4.5 0.8 1.0
C F:THR218 4.6 1.0 1.0
CB F:VAL214 4.7 0.5 1.0
CA F:THR219 4.8 0.9 1.0
C F:VAL214 4.8 1.0 1.0
O F:GLY217 4.9 0.5 1.0
C F:SER215 4.9 0.3 1.0
OG F:SER216 5.0 0.1 1.0
OG F:SER215 5.0 0.3 1.0

Reference:

M.Ruszkowski, M.Ruszkowski. N/A N/A.
ISSN: ESSN 1470-8728
PubMed: 30072492
DOI: 10.1042/BCJ20180289
Page generated: Sat Dec 12 12:51:46 2020

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