Chlorine in PDB 6czp: 2.2 Angstrom Resolution Crystal Structure Oxygen-Insensitive Nad(P)H- Dependent Nitroreductase Nfsb From Vibrio Vulnificus in Complex with Fmn

Protein crystallography data

The structure of 2.2 Angstrom Resolution Crystal Structure Oxygen-Insensitive Nad(P)H- Dependent Nitroreductase Nfsb From Vibrio Vulnificus in Complex with Fmn, PDB code: 6czp was solved by G.Minasov, Z.Wawrzak, T.Skarina, S.Grimshaw, K.Kwon, A.Savchenko, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.91 / 2.24
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 118.769, 119.659, 131.175, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 22.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 2.2 Angstrom Resolution Crystal Structure Oxygen-Insensitive Nad(P)H- Dependent Nitroreductase Nfsb From Vibrio Vulnificus in Complex with Fmn (pdb code 6czp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the 2.2 Angstrom Resolution Crystal Structure Oxygen-Insensitive Nad(P)H- Dependent Nitroreductase Nfsb From Vibrio Vulnificus in Complex with Fmn, PDB code: 6czp:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 6czp

Go back to Chlorine Binding Sites List in 6czp
Chlorine binding site 1 out of 3 in the 2.2 Angstrom Resolution Crystal Structure Oxygen-Insensitive Nad(P)H- Dependent Nitroreductase Nfsb From Vibrio Vulnificus in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 2.2 Angstrom Resolution Crystal Structure Oxygen-Insensitive Nad(P)H- Dependent Nitroreductase Nfsb From Vibrio Vulnificus in Complex with Fmn within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl302

b:57.3
occ:1.00
ND2 C:ASN115 3.0 52.3 1.0
CB C:ASN115 3.6 49.8 1.0
CG C:ASN115 3.8 50.6 1.0
CA C:GLU112 4.1 60.3 1.0
O C:VAL111 4.5 56.1 1.0
O C:GLU112 4.7 56.3 1.0
N C:GLU112 4.7 59.5 1.0
CB C:GLU112 4.7 64.5 1.0
CG C:GLU112 4.7 66.1 1.0
C C:VAL111 4.8 57.1 1.0
C C:GLU112 4.9 57.8 1.0
CA C:ASN115 5.0 49.9 1.0
OD1 C:ASN115 5.0 47.5 1.0

Chlorine binding site 2 out of 3 in 6czp

Go back to Chlorine Binding Sites List in 6czp
Chlorine binding site 2 out of 3 in the 2.2 Angstrom Resolution Crystal Structure Oxygen-Insensitive Nad(P)H- Dependent Nitroreductase Nfsb From Vibrio Vulnificus in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 2.2 Angstrom Resolution Crystal Structure Oxygen-Insensitive Nad(P)H- Dependent Nitroreductase Nfsb From Vibrio Vulnificus in Complex with Fmn within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl302

b:53.6
occ:1.00
N D:ILE90 3.3 35.1 1.0
O D:HOH457 3.4 67.1 1.0
CA D:ALA89 3.6 34.1 1.0
O D:ILE90 3.6 35.7 1.0
CB D:ALA89 3.8 34.6 1.0
CB D:ALA135 3.9 35.3 1.0
C D:ALA89 4.0 34.4 1.0
CG2 D:ILE90 4.1 34.2 1.0
CG D:ARG129 4.2 32.7 1.0
NE D:ARG129 4.3 35.8 1.0
CA D:ILE90 4.3 34.6 1.0
C D:ILE90 4.4 36.5 1.0
CD D:ARG129 4.7 34.8 1.0
CB D:ILE90 4.8 34.9 1.0
O D:HOH454 4.8 40.6 1.0
O D:THR88 4.8 34.8 1.0
O D:HOH447 4.8 46.5 1.0
CB D:ARG129 4.9 31.4 1.0
N D:ALA89 4.9 33.1 1.0

Chlorine binding site 3 out of 3 in 6czp

Go back to Chlorine Binding Sites List in 6czp
Chlorine binding site 3 out of 3 in the 2.2 Angstrom Resolution Crystal Structure Oxygen-Insensitive Nad(P)H- Dependent Nitroreductase Nfsb From Vibrio Vulnificus in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 2.2 Angstrom Resolution Crystal Structure Oxygen-Insensitive Nad(P)H- Dependent Nitroreductase Nfsb From Vibrio Vulnificus in Complex with Fmn within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl302

b:66.3
occ:1.00
N G:GLU92 3.1 41.7 1.0
NH1 G:ARG129 3.4 33.8 1.0
CB G:GLU92 3.5 48.2 1.0
CB G:ASP91 3.6 42.1 1.0
CA G:ASP91 3.9 40.6 1.0
CA G:GLU92 3.9 44.3 1.0
NH2 G:ARG129 3.9 34.0 1.0
O A:HOH403 4.0 53.2 1.0
C G:ASP91 4.0 40.6 1.0
CZ G:ARG129 4.1 35.5 1.0
CG G:ASP91 4.7 43.0 1.0
OE2 A:GLU55 4.8 52.6 1.0
CG G:GLU92 4.9 53.5 1.0
O G:HOH424 4.9 62.0 1.0

Reference:

G.Minasov, Z.Wawrzak, T.Skarina, S.Grimshaw, K.Kwon, A.Savchenko, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.2 Angstrom Resolution Crystal Structure Oxygen-Insensitive Nad(P)H-Dependent Nitroreductase Nfsb From Vibrio Vulnificus in Complex with Fmn. To Be Published.
Page generated: Sat Dec 12 12:51:52 2020

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