Chlorine in PDB 6d1n: Apo Structure of Bacteroides Uniformis Beta-Glucuronidase 1

All present enzymatic activity of Apo Structure of Bacteroides Uniformis Beta-Glucuronidase 1:
3.2.1.31;

The structure of Apo Structure of Bacteroides Uniformis Beta-Glucuronidase 1, PDB code: 6d1n was solved by W.G.Walton, S.J.Pellock, M.R.Redinbo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.61 / 2.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	125.780, 130.275, 94.220, 90.00, 100.27, 90.00
R / Rfree (%)	14 / 18.7

The binding sites of Chlorine atom in the Apo Structure of Bacteroides Uniformis Beta-Glucuronidase 1 (pdb code 6d1n). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Apo Structure of Bacteroides Uniformis Beta-Glucuronidase 1, PDB code: 6d1n:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Apo Structure of Bacteroides Uniformis Beta-Glucuronidase 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Apo Structure of Bacteroides Uniformis Beta-Glucuronidase 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl706 b:25.5 occ:1.00 NE2 A:GLN569 3.2 22.4 1.0 O A:HOH993 3.3 23.4 1.0 N A:ARG574 3.3 20.7 1.0 NZ A:LYS575 3.5 20.9 1.0 CG A:LYS575 3.9 18.9 1.0 CE1 A:PHE525 3.9 22.0 1.0 OD1 A:ASN573 4.0 21.5 1.0 CB A:ARG574 4.1 18.9 1.0 CA A:ARG574 4.1 19.2 1.0 CE A:LYS575 4.1 25.3 1.0 CA A:GLY512 4.1 23.7 1.0 CD A:GLN569 4.3 25.3 1.0 C A:ASN573 4.3 23.9 1.0 N A:LYS575 4.3 20.1 1.0 C A:ARG574 4.3 22.6 1.0 CA A:ASN573 4.3 18.4 1.0 CG A:ASN573 4.4 21.3 1.0 CG A:GLN569 4.5 19.9 1.0 CD A:ARG563 4.6 19.8 1.0 CZ2 A:TRP483 4.6 22.1 1.0 NH1 A:ARG563 4.6 19.9 1.0 CD A:LYS575 4.6 20.6 1.0 CZ A:PHE525 4.7 24.3 1.0 N A:GLY512 4.7 21.2 1.0 CD1 A:PHE525 4.9 19.9 1.0 NE A:ARG563 4.9 19.2 1.0 CG A:ARG574 4.9 19.6 1.0 CZ A:ARG563 4.9 24.0 1.0 ND2 A:ASN573 4.9 21.6 1.0 NE1 A:TRP483 4.9 23.5 1.0 O A:PHE572 5.0 16.2 1.0 CB A:ASN573 5.0 20.9 1.0

Chlorine binding site 2 out of 2 in the Apo Structure of Bacteroides Uniformis Beta-Glucuronidase 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Apo Structure of Bacteroides Uniformis Beta-Glucuronidase 1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl707 b:23.1 occ:1.00 NZ B:LYS575 3.3 21.5 1.0 N B:ARG574 3.3 21.5 1.0 NE2 B:GLN569 3.3 22.7 1.0 CG B:LYS575 3.8 17.9 1.0 CE1 B:PHE525 3.9 20.2 1.0 OD1 B:ASN573 4.0 19.2 1.0 CA B:ARG574 4.1 22.0 1.0 CB B:ARG574 4.1 21.3 1.0 CA B:GLY512 4.2 22.2 1.0 CE B:LYS575 4.2 25.4 1.0 C B:ASN573 4.3 23.4 1.0 N B:LYS575 4.3 20.1 1.0 CA B:ASN573 4.3 20.7 1.0 C B:ARG574 4.3 22.8 1.0 CG B:ASN573 4.3 18.8 1.0 CD B:GLN569 4.4 26.6 1.0 CD B:ARG563 4.4 20.1 1.0 NH1 B:ARG563 4.4 20.5 1.0 CG B:GLN569 4.6 20.9 1.0 CZ B:PHE525 4.6 23.0 1.0 CD B:LYS575 4.6 22.9 1.0 N B:GLY512 4.8 20.2 1.0 ND2 B:ASN573 4.8 21.3 1.0 CZ2 B:TRP483 4.8 22.2 1.0 CD1 B:PHE525 4.8 20.9 1.0 NE B:ARG563 4.8 22.5 1.0 CZ B:ARG563 4.9 24.8 1.0 CB B:ASN573 4.9 17.1 1.0 CG B:ARG574 4.9 20.3 1.0 O B:PHE572 4.9 18.4 1.0 NE1 B:TRP483 5.0 20.1 1.0 O B:ARG574 5.0 21.3 1.0

S.J.Pellock, W.G.Walton, K.A.Biernat, D.Torres-Rivera, B.C.Creekmore, Y.Xu, J.Liu, A.Tripathy, L.J.Stewart, M.R.Redinbo. Three Structurally and Functionally Distinct Beta-Glucuronidases From the Human Gut Microbebacteroides Uniformis. J. Biol. Chem. V. 293 18559 2018.
ISSN: ESSN 1083-351X
PubMed: 30301767
DOI: 10.1074/JBC.RA118.005414