Chlorine in PDB 6d1q: Crystal Structure of E. Coli Rpph-Dapf Complex, Monomer

All present enzymatic activity of Crystal Structure of E. Coli Rpph-Dapf Complex, Monomer:
5.1.1.7;

The structure of Crystal Structure of E. Coli Rpph-Dapf Complex, Monomer, PDB code: 6d1q was solved by A.Gao, A.Serganov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	123.65 / 2.15
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	161.440, 192.320, 50.719, 90.00, 90.00, 90.00
R / Rfree (%)	21.3 / 23.4

The binding sites of Chlorine atom in the Crystal Structure of E. Coli Rpph-Dapf Complex, Monomer (pdb code 6d1q). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of E. Coli Rpph-Dapf Complex, Monomer, PDB code: 6d1q:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of E. Coli Rpph-Dapf Complex, Monomer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of E. Coli Rpph-Dapf Complex, Monomer within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:62.3 occ:1.00 O A:HOH411 2.9 57.8 1.0 NE A:ARG78 3.3 68.5 1.0 CA A:GLY76 3.4 55.7 1.0 N A:ARG78 3.5 54.5 1.0 N A:CYS79 3.5 52.5 1.0 C A:GLY76 3.5 52.4 1.0 CB A:ARG78 3.5 56.2 1.0 NH2 A:ARG78 3.7 58.7 1.0 SG A:CYS79 3.8 58.4 1.0 O A:GLY76 3.9 50.2 1.0 CZ A:ARG78 3.9 69.3 1.0 CA A:ARG78 3.9 60.7 1.0 N A:ALA77 3.9 53.3 1.0 N A:GLY76 3.9 58.7 1.0 CA A:GLY8 4.0 69.8 1.0 C A:GLY8 4.0 77.9 1.0 CE2 A:PHE13 4.1 57.5 1.0 O A:GLY8 4.2 79.7 1.0 C A:ARG78 4.2 55.0 1.0 CB A:CYS79 4.2 54.0 1.0 CD A:ARG78 4.2 65.6 1.0 CG A:ARG78 4.4 57.9 1.0 CA A:CYS79 4.5 50.9 1.0 C A:ALA77 4.5 55.6 1.0 N A:LEU9 4.5 83.0 1.0 CD1 A:LEU9 4.6 79.7 1.0 CZ A:PHE13 4.7 51.9 1.0 CB A:LEU9 4.7 78.2 1.0 CD2 A:PHE13 4.8 58.7 1.0 CA A:ALA77 4.8 50.7 1.0 N A:GLY8 4.9 64.5 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of E. Coli Rpph-Dapf Complex, Monomer


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of E. Coli Rpph-Dapf Complex, Monomer within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl802 b:80.7 occ:1.00 O A:HOH434 3.1 56.5 1.0 CD A:PRO50 4.1 37.6 1.0 NH2 B:ARG145 4.2 53.6 1.0 NH1 B:ARG145 4.2 53.7 1.0 CG A:PRO50 4.3 40.5 1.0 O A:HOH420 4.3 53.3 1.0 CD B:ARG141 4.4 51.9 1.0 CA B:ARG134 4.5 45.8 1.0 NH1 B:ARG134 4.6 44.6 1.0 CZ B:ARG145 4.7 51.1 1.0 CZ B:ARG134 4.7 49.8 1.0 CB B:ARG134 4.7 44.6 1.0 O B:VAL133 4.8 43.8 1.0 O A:ALA18 4.8 43.8 1.0 CG B:ARG134 4.9 48.6 1.0 NE B:ARG141 4.9 52.2 1.0 NH2 B:ARG134 4.9 46.5 1.0

A.Gao, N.Vasilyev, D.J.Luciano, R.Levenson-Palmer, J.Richards, W.M.Marsiglia, N.J.Traaseth, J.G.Belasco, A.Serganov. Structural and Kinetic Insights Into Stimulation of Rpph-Dependent Rna Degradation By the Metabolic Enzyme Dapf. Nucleic Acids Res. V. 46 6841 2018.
ISSN: ESSN 1362-4962
PubMed: 29733359
DOI: 10.1093/NAR/GKY327